Evidence map›Paper›PMID 23727893›Full record

ArticleNature immunology2013

A conserved human T cell population targets mycobacterial antigens presented by CD1b.

Ildiko Van Rhijn, Anne Kasmar, Annemieke de Jong, Stephanie Gras, Mugdha Bhati, Marieke E Doorenspleet, Niek de Vries, Dale I Godfrey, John D Altman, Wilco de Jager and 2 more

Abstract read
In one paragraph

Article in Nature immunology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 144 papers.

0numbers the graph read from it
0cells of the map it votes in
144citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

144 citing papers in PubMed.

  1. Trial
  2. Review
  3. Tuberculosis in Pregnancy: Challenges of Immune Protection.The Journal of infectious diseases · 2026
    Review
  4. Review
  5. Review
  6. Review
  7. Metabolic control of innate-like T cells.Nature reviews. Immunology · 2026
    Review
  8. Article
  9. Article
  10. Article
  11. Sideways lipid presentation by the antigen-presenting molecule CD1c.bioRxiv : the preprint server for biology · 2025
    Article
  12. Three-Dimensional Modeling ofAntibodies (Basel, Switzerland) · 2025
    Article
  13. Sensing mycobacteria through unconventional pathways.The Journal of clinical investigation · 2025
    Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. γδ T cells: origin and fate, subsets, diseases and immunotherapy.Signal transduction and targeted therapy · 2023
    Review
  20. Article

84 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Ildiko Van RhijnDivision of Rheumatology, Immunology and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA. i.vanrhijn@uu.nl
Anne Kasmar
Annemieke de Jong
Stephanie Gras
Mugdha Bhati
Marieke E Doorenspleet
Niek de Vries
Dale I Godfrey
John D Altman
Wilco de Jager
Jamie Rossjohn
D Branch Moody

Funding

T cell response to CDI-restricted lipids in tuberculosisR01AI049313 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI MOODY, DAVID BRANCH · 2001 to 2025
$10.6M
CD1 Presentation of Self Lipids to Human T CellsR01AR048632 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI MOODY, DAVID BRANCH · 2002 to 2024
$9.4M
CD1 autoreactive T cells in human inflammatory skin diseaseR37AR048632 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI DAVID Branch MOODY · 2025 to 2026
$1.1M
Mycolate-specific T cell function in human immunity to Mycobacterium tuberculosisK08AI089858 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI KASMAR, ANNE · 2010 to 2014
$686k
NIAID NIH HHS AI04393NIAID NIH HHS K08 AI089858NIAID NIH HHS R01 AI049313NIAMS NIH HHS AR048632NIAMS NIH HHS R01 AR048632NIAMS NIH HHS R37 AR048632
6 · The paper itself

Abstract

Human T cell antigen receptors (TCRs) pair in millions of combinations to create complex and unique T cell repertoires for each person. Through the use of tetramers to analyze TCRs reactive to the antigen-presenting molecule CD1b, we detected T cells with highly stereotyped TCR α-chains present among genetically unrelated patients with tuberculosis. The germline-encoded, mycolyl lipid-reactive (GEM) TCRs had an α-chain bearing the variable (V) region TRAV1-2 rearranged to the joining (J) region TRAJ9 with few nontemplated (N)-region additions. Analysis of TCRs by high-throughput sequencing, binding and crystallography showed linkage of TCRα sequence motifs to high-affinity recognition of antigen. Thus, the CD1-reactive TCR repertoire is composed of at least two compartments: high-affinity GEM TCRs, and more-diverse TCRs with low affinity for CD1b-lipid complexes. We found high interdonor conservation of TCRs that probably resulted from selection by a nonpolymorphic antigen-presenting molecule and an immunodominant antigen.

Indexed as

Amino Acid SequenceAntigens, CD1Base SequenceClone CellsCrystallography, X-RayFlow CytometryHumansModels, MolecularMolecular Sequence DataMycobacteriumMycobacterium InfectionsReceptors, Antigen, T-Cell, alpha-betaReverse Transcriptase Polymerase Chain ReactionRNASequence Analysis, DNAT-LymphocytesAntigens, CD1Receptors, Antigen, T-Cell, alpha-betaRNA

Identifiers

PMID23727893
PMCPMC3723453

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.