Evidence map›Paper›PMID 23727532›Full record

ArticleNeuroImage2013

Relation between variants in the neurotrophin receptor gene, NTRK3, and white matter integrity in healthy young adults.

Meredith N Braskie, Omid Kohannim, Neda Jahanshad, Ming-Chang Chiang, Marina Barysheva, Arthur W Toga, John M Ringman, Grant W Montgomery, Katie L McMahon, Greig I de Zubicaray and 3 more

Open access · hybridAbstract readTwin Study
In one paragraph

Article in NeuroImage, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 58 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Reduced Cerebral White Matter Integrity Assessed by DTI in Cognitively Normal H63D-HFE Polymorphism Carriers.Journal of neuroimaging : official journal of the American Society of Neuroimaging · 2018
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Meredith N BraskieImaging Genetics Center, Laboratory of Neuro Imaging, Dept. of Neurology, UCLA School of Medicine, Los Angeles, CA 90095, USA.
Omid Kohannim
Neda Jahanshad
Ming-Chang Chiang
Marina Barysheva
Arthur W Toga
John M Ringman
Grant W Montgomery
Katie L McMahon
Greig I de Zubicaray
Nicholas G Martin
Margaret J Wright
Paul M Thompson
Imaging Center · USQIMR Berghofer Medical Research Institute · AUFoundation for Psychocultural Research · USNational Imaging Facility · AUUniversity of Queensland · AU

Funding

UCLA-Caltech Medical Scientist Training ProgramT32GM008042 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AJIJOLA, OLUJIMI A, DAWSON, DAVID WAYNE · 1985 to 2023
$29.9M
UCLA ALZHEIMERS DISEASE RESEARCH CENTERP50AG016570 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BREDESEN, DALE E. · 1999 to 2014
$25.9M
TR&D3: Intrinsic Surface MappingP41EB015922 · NIBIB · UNIVERSITY OF SOUTHERN CALIFORNIA · PI THOMPSON, PAUL M · 2012 to 2022
$14.1M
HARDI Mapping of Disease Effects on the BrainR01EB008432 · NIBIB · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI THOMPSON, PAUL M · 2009 to 2012
$2.6M
Genetic influences on the brain: A twin imaging studyR01HD050735 · NICHD · QUEENSLAND INSTITUTE OF MEDICAL RESEARCH · PI WRIGHT, MARGARET JANE · 2007 to 2011
$2.6M
Alzheimer's disease risk analyzed using population imaging genomicsR01AG040060 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI THOMPSON, PAUL M · 2011 to 2016
$2.5M
A Multidimensional Alzheimer's Disease Brain AtlasR01EB008281 · NIBIB · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI THOMPSON, PAUL M · 2007 to 2010
$1.4M
Computational Modeling of High-Field MR ImagesR01EB007813 · NIBIB · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI THOMPSON, PAUL M · 2007 to 2010
$1.3M
Assessment of Gene Effects on the Brain and Disease Risk through Machine LearningF30AG041681 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KOHANNIM, OMID · 2011 to 2013
$81k
NIA NIH HHS AG040060NIA NIH HHS F30 AG041681NIA NIH HHS P50 AG016570NIA NIH HHS P50 AG16570NIA NIH HHS R01 AG040060NIBIB NIH HHS EB007813NIBIB NIH HHS EB008281NIBIB NIH HHS EB008432NIBIB NIH HHS P41 EB015922NIBIB NIH HHS R01 EB007813NIBIB NIH HHS R01 EB008281NIBIB NIH HHS R01 EB008432NICHD NIH HHS R01 HD050735NIGMS NIH HHS T32 GM008042
6 · The paper itself

Abstract

The NTRK3 gene (also known as TRKC) encodes a high affinity receptor for the neurotrophin 3'-nucleotidase (NT3), which is implicated in oligodendrocyte and myelin development. We previously found that white matter integrity in young adults is related to common variants in genes encoding neurotrophins and their receptors. This underscores the importance of neurotrophins for white matter development. NTRK3 variants are putative risk factors for schizophrenia, bipolar disorder, and obsessive-compulsive disorder hoarding, suggesting that some NTRK3 variants may affect the brain. To test this, we scanned 392 healthy adult twins and their siblings (mean age, 23.6 ± 2.2 years; range: 20-29 years) with 105-gradient 4-Tesla diffusion tensor imaging (DTI). We identified 18 single nucleotide polymorphisms (SNPs) in the NTRK3 gene that have been associated with neuropsychiatric disorders. We used a multi-SNP model, adjusting for family relatedness, age, and sex, to relate these variants to voxelwise fractional anisotropy (FA) - a DTI measure of white matter integrity. FA was optimally predicted (based on the highest false discovery rate critical p), by five SNPs (rs1017412, rs2114252, rs16941261, rs3784406, and rs7176429; overall FDR critical p=0.028). Gene effects were widespread and included the corpus callosum genu and inferior longitudinal fasciculus - regions implicated in several neuropsychiatric disorders and previously associated with other neurotrophin-related genetic variants in an overlapping sample of subjects. NTRK3 genetic variants, and neurotrophins more generally, may influence white matter integrity in brain regions implicated in neuropsychiatric disorders.

Indexed as

Polymorphism, Single NucleotideAdultAnisotropyDiffusion Tensor ImagingFemaleGenetic Predisposition to DiseaseGenotypeHumansImage Processing, Computer-AssistedLinkage DisequilibriumMaleMental DisordersNerve Fibers, MyelinatedReceptor, trkCYoung AdultReceptor, trkCBDNFbipolar disorderBipolar disorderBPDbrain-derived neurotrophic factordiffusion tensor imagingDiffusion tensor imagingdizygoticDTIDZFAfalse discovery rateFDRFLIRTfractional anisotropyFractional anisotropyFSL's linear image registration toolfull-width at half maximumFWHMHardy–Weinberg equilibriumHWEIFOILF and SLFinferior and superior longitudinal fasciculiinferior fronto-occipital fasciculusLDlinkage disequilibriumMAFminor allele frequenciesmonozygoticMZneurotrophic tyrosine kinase, receptor, type 1neurotrophic tyrosine kinase, receptor, type 3 geneneurotrophin 3′-nucleotidaseNT3NTRK1NTRK3 aka TRKCobsessive–compulsive disorderObsessive–compulsive disorderOCDSchizophreniasingle nucleotide polymorphismSingle nucleotide polymorphismSNP

Identifiers

PMID23727532
PMCPMC3948328
OpenAlexW2093827602

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.