Evidence map›Paper›PMID 23727086›Full record

ArticleJournal of the American College of Cardiology2013

Candidate gene association study of coronary artery calcification in chronic kidney disease: findings from the CRIC study (Chronic Renal Insufficiency Cohort).

Jane F Ferguson, Gregory J Matthews, Raymond R Townsend, Dominic S Raj, Peter A Kanetsky, Matthew Budoff, Michael J Fischer, Sylvia E Rosas, Radhika Kanthety, Mahboob Rahman and 25 more

Registry-linked trialOpen access · greenAbstract readMulticenter Study
In one paragraph

Article in Journal of the American College of Cardiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00304148 (Prospective Cohort Study of Chronic Renal Insufficiency), which is not on this map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00304148 active not recruitingnot on this map

Prospective Cohort Study of Chronic Renal Insufficiency

TypeobservationalSponsorUniversity of PennsylvaniaRan2003 to 2028Enrolled5,499ConditionsRenal Insufficiency, Chronic
3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 48 citations in OpenAlex.

  1. Trial
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. OMICS in Chronic Kidney Disease: Focus on Prognosis and Prediction.International journal of molecular sciences · 2021
    Review
  9. CYP24A1 and KL polymorphisms are associated with the extent of vascular calcification but do not improve prediction of cardiovascular events.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2021
    Article
  10. Article
  11. Envelope method with ignorable missing data.Electronic journal of statistics · 2021
    Article
  12. Frontiers in immunology · 2020
    Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Aging · 2017
    Article
  19. Increased Risk of theDisease markers · 2017
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

35 authors at 16 institutions in 3 countries.

Jane F FergusonCardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
Gregory J Matthews
Raymond R Townsend
Dominic S Raj
Peter A Kanetsky
Matthew Budoff
Michael J Fischer
Sylvia E Rosas
Radhika Kanthety
Mahboob Rahman
Stephen R Master
Atif Qasim
Mingyao Li
Nehal N Mehta
Haiqing Shen
Braxton D Mitchell
Jeffrey R O'Connell
Alan R Shuldiner
Weang Kee Ho
Robin Young
Asif Rasheed
John Danesh
Jiang He
John W Kusek
Akinlolu O Ojo
John Flack
Alan S Go
Crystal A Gadegbeku
Jackson T Wright
Danish Saleheen
Harold I Feldman
Daniel J Rader
Andrea S Foulkes
Muredach P Reilly
CRIC Study Principal Investigators
California University of Pennsylvania · USUniversity of Maryland, Baltimore · USCardiovascular Institute of the South · USCase Western Reserve University · USUniversity of Cambridge · GBCenter for Non-Communicable Diseases · PKEdward Hines, Jr. VA Hospital · USGeorge Washington University · USKaiser Permanente · USNational Cancer Institute · USTemple University · USTulane University · USUniversity of California, Los Angeles · USUniversity of Massachusetts Amherst · USUniversity of Michigan · USWayne State University · US

Funding

UCSF CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024131 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSTON, S. CLAIBORNE · 2006 to 2011
$111.2M
Institute for Clinical and Translational Research (UL1)UL1RR025005 · NCRR · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2007 to 2011
$75.8M
INSTITUTIONAL CLINICAL AND TRANSLATIONAL SCIENCE AWARDUL1RR024134 · NCRR · UNIVERSITY OF PENNSYLVANIA · PI FITZGERALD, GARRET A · 2006 to 2011
$70.4M
CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024989 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI DAVIS, PAMELA B · 2007 to 2011
$53.7M
MICHIGAN INSTITUTE FOR CLINICAL AND HEALTH RESEARCH (MICHR) (UL1): (BPCA)UL1RR024986 · NCRR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHANLEY, THOMAS P. · 2007 to 2011
$51.2M
Scientific and Data Coordinating Center(SDCC) for the P*U01DK060990 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI FELDMAN, HAROLD I · 2001 to 2017
$50.1M
Clinical and Translational Science Collaborative of ClevelandUL1TR000439 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI KONSTAN, MICHAEL W. · 2012 to 2016
$50.0M
VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Patrick Seale · 1986 to 2026
$48.3M
ZINC GLUCONATE GLYCINE LOZENGES &VITAMIN C EFFECTS ON COMMON COLDM01RR000042 · NCRR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELSTROM, REBECCA L · 1985 to 2007
$40.8M
Zonulin Antibodies in Intestinal Permeabilitiy in IDDMM01RR016500 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI ONUKWUGHA, EBERECHUKWU · 2002 to 2009
$20.2M
Study of the Care and Outcomes of REnal InsufficiencyU01DK060902 · NIDDK · KAISER FOUNDATION RESEARCH INSTITUTE · PI GO, ALAN S · 2001 to 2025
$19.5M
ZENARESTAT IN DIABETIC NEUROPATHYM01RR005096 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI WOLTERING, EUGENE A · 1990 to 2006
$17.4M
British Heart Foundation RG/08/014/24067Department of Health NF-SI-0512-10165Medical Research Council MR/L003120/1NCATS NIH HHS UL1 TR000439NCRR NIH HHS M01RR000042NCRR NIH HHS M01RR16500NCRR NIH HHS RR05096NCRR NIH HHS UL1RR024131NCRR NIH HHS UL1RR024134NCRR NIH HHS UL1RR024986NCRR NIH HHS UL1RR024989NCRR NIH HHS UL1RR025005NCRR NIH HHS UL1RR029879NHLBI NIH HHS K24 HL107643NHLBI NIH HHS R01-HL088119NHLBI NIH HHS R01 HL107196NHLBI NIH HHS R01-HL107196NHLBI NIH HHS R01-HL69313NHLBI NIH HHS U01-HL72515NIDDK NIH HHS 5U01DK060902NIDDK NIH HHS 5U01DK060963NIDDK NIH HHS 5U01DK060984NIDDK NIH HHS 5U01DK060990NIDDK NIH HHS 5U01DK06102NIDDK NIH HHS 5U01DK061021NIDDK NIH HHS 5U01DK061028NIDDK NIH HHS 5U01DK60980NIDDK NIH HHS P20-DK 019525NIDDK NIH HHS P30 DK072488NIDDK NIH HHS R01 DK071224NIDDK NIH HHS R01-DK071224NIDDK NIH HHS U01 DK061028
6 · The paper itself

Abstract

objectivesThis study sought to identify loci for coronary artery calcification (CAC) in patients with chronic kidney disease (CKD).

backgroundCKD is associated with increased CAC and subsequent coronary heart disease (CHD), but the mechanisms remain poorly defined. Genetic studies of CAC in CKD may provide a useful strategy for identifying novel pathways in CHD.

methodsWe performed a candidate gene study (∼2,100 genes; ∼50,000 single nucleotide polymorphisms [SNPs]) of CAC within the CRIC (Chronic Renal Insufficiency Cohort) study (N = 1,509; 57% European, 43% African ancestry). SNPs with preliminary evidence of association with CAC in CRIC were examined for association with CAC in the PennCAC (Penn Coronary Artery Calcification) (N = 2,560) and AFCS (Amish Family Calcification Study) (N = 784) samples. SNPs with suggestive replication were further analyzed for association with myocardial infarction (MI) in the PROMIS (Pakistan Risk of Myocardial Infarction Study) (N = 14,885).

resultsOf 268 SNPs reaching p < 5 × 10(-4) for CAC in CRIC, 28 SNPs in 23 loci had nominal support (p < 0.05 and in same direction) for CAC in PennCAC or AFCS. Besides chr9p21 and COL4A1, known loci for CHD, these included SNPs having reported genome-wide association study association with hypertension (e.g., ATP2B1). In PROMIS, 4 of the 23 suggestive CAC loci (chr9p21, COL4A1, ATP2B1, and ABCA4) had significant associations with MI, consistent with their direction of effect on CAC.

conclusionsWe identified several loci associated with CAC in CKD that also relate to MI in a general population sample. CKD imparts a high risk of CHD and may provide a useful setting for discovery of novel CHD genes and pathways.

Indexed as

Coronary VesselsAdultAgedBlack PeopleCohort StudiesFemaleGenome-Wide Association StudyHumansMaleMiddle AgedMyocardial InfarctionPolymorphism, Single NucleotideProspective StudiesRenal Insufficiency, ChronicRisk FactorsVascular CalcificationAAAfrican ancestryCACcandidate genesCHDchronic kidney diseasechronic kidney disease (CKD)Chronic Renal Insufficiency Cohort Study (CRIC)CKDcoronary artery calcificationcoronary artery calcification (CAC)coronary heart diseaseEAeGFRestimated glomerular filtration rateEuropean ancestrygenome-wide association study/studiesGWASHDLhigh-density lipoprotein cholesterolHTNhypertensionLDLDLlinkage disequilibriumlow-density lipoproteinMAFMIminor allele frequencymyocardial infarctionmyocardial infarction (MI)odds ratioORPCprincipal componentrisk factorssingle nucleotide polymorphismsingle nucleotide polymorphisms (SNPs)SNP

Identifiers

PMID23727086
PMCPMC3953823
OpenAlexW1492550623

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.