Evidence map›Paper›PMID 23725765›Full record

ArticleDevelopmental cell2013

Atrial identity is determined by a COUP-TFII regulatory network.

San-pin Wu, Chiang-Min Cheng, Rainer B Lanz, Tiannan Wang, Jonathan L Respress, Sameer Ather, Wen Chen, Shaw-Jenq Tsai, Xander H T Wehrens, Ming-Jer Tsai and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 176 citations in OpenAlex.

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  8. Isolation and Culture of Neonatal Mouse Atrial and Ventricular Myocytes.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
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39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 2 countries.

San-pin WuDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
Chiang-Min Cheng
Rainer B Lanz
Tiannan Wang
Jonathan L Respress
Sameer Ather
Wen Chen
Shaw-Jenq Tsai
Xander H T Wehrens
Ming-Jer Tsai
Sophia Y Tsai
Baylor College of Medicine · US

Funding

ProteomicsU19DK062434 · NIDDK · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI O'MALLEY, BERT W · 2002 to 2011
$37.4M
TISSUE COACTIVATOR AND RECEPTOR EXPRESSION FINGERPRINTSP01DK059820 · NIDDK · INSTITUT DE GENETIQUE ET BIOLOGIE MOLECU · PI O'MALLEY, BERT W · 2001 to 2016
$23.1M
Initiative for Maximizing Student Development (IMSD) ProgramR25GM056929 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI PEREIRA, FRED A · 1998 to 2023
$12.4M
Diabetes Endocrinology Research CenterP30DK079638 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI CHAN, LAWRENCE · 2008 to 2012
$6.4M
MECHANISM OF ACTION OF COUP TRANSCRIPTION FACTORSR37DK045641 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI TSAI, MING-JER · 1999 to 2008
$3.4M
A Nuclear Receptor COUP-TFII in Vascular Function: Angiogenesis and TumoirgenesisR01HL076448 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI TSAI, SOPHIA Y. · 2005 to 2012
$3.0M
MECHANISMS OF ACTION OF COUP TRANSCRIPTION FACTORSR01DK045641 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI TSAI, MING-JER · 1992 to 2014
$2.2M
Nuclear Orphan Receptor, COUP-TFII, in Energy Metabolism and DiseaseR01HL114539 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI TSAI, SOPHIA Y. · 2013 to 2016
$1.5M
NHLBI NIH HHS HL76448NHLBI NIH HHS R01 HL076448NHLBI NIH HHS R01 HL114539NIDDK NIH HHS DK45641NIDDK NIH HHS DK59820NIDDK NIH HHS DK62434NIDDK NIH HHS P01 DK059820NIDDK NIH HHS P30 DK079638NIDDK NIH HHS R01 DK045641NIDDK NIH HHS R37 DK045641NIDDK NIH HHS U19 DK062434NIGMS NIH HHS R25 GM056929
6 · The paper itself

Abstract

Atria and ventricles exhibit distinct molecular profiles that produce structural and functional differences between the two cardiac compartments. However, the factors that determine these differences remain largely undefined. Cardiomyocyte-specific COUP-TFII ablation produces ventricularized atria that exhibit ventricle-like action potentials, increased cardiomyocyte size, and development of extensive T tubules. Changes in atrial characteristics are accompanied by alterations of 2,584 genes, of which 81% were differentially expressed between atria and ventricles, suggesting that a major function of myocardial COUP-TFII is to determine atrial identity. Chromatin immunoprecipitation assays using E13.5 atria identified classic atrial-ventricular identity genes Tbx5, Hey2, Irx4, MLC2v, MLC2a, and MLC1a, among many other cardiac genes, as potential COUP-TFII direct targets. Collectively, our results reveal that COUP-TFII confers atrial identity through direct binding and by modulating expression of a broad spectrum of genes that have an impact on atrial development and function.

Indexed as

Gene Expression Regulation, DevelopmentalAction PotentialsAnimalsBasic Helix-Loop-Helix ProteinsCell DifferentiationCell ProliferationCell SizeChromatin ImmunoprecipitationEmbryo, MammalianHeart AtriaHeart VentriclesHomeodomain ProteinsMiceMice, Inbred C57BLMice, KnockoutMyocardiumBasic Helix-Loop-Helix ProteinsBcl11b protein, mouseHey2 protein, mouseHomeodomain ProteinsIrx4 protein, mouseRepressor ProteinsRNA, MessengerT-Box Domain ProteinsT-box transcription factor 5Tumor Suppressor Proteins

Identifiers

PMID23725765
PMCPMC3687546
OpenAlexW2010655878

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.