ArticlePloS one2013
Development of DArT marker platforms and genetic diversity assessment of the U.S. collection of the new oilseed crop lesquerella and related species.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.
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Who cites it
124 citing papers in PubMed.
- High Genetic Connectivity and Weak Structure Shape Australian White Ibis Metapopulation Dynamics Across an Urban Coastal Landscape.Ecology and evolution · 2026Article
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- Maximizing the Quality of Non-Invasive Samples for Conservation Genetics Using Targeted Next-Generation Sequencing: A Comparison of Fecal DNA Preservation Methodologies.Ecology and evolution · 2026Article
- Application of NGS Technology, Association Mapping, and Physical Mapping Technologies to Identify Candidate Genes Associated with Maize (International journal of molecular sciences · 2026Article
- Characterization of spelt wheat (Triticum spelta L.) genotypes using DArTseq technology.Journal of applied genetics · 2026Article
- Scaling up orphan crop research: genebank genetics highlight geographic structure in cultivated cowpea from 10 617 global accessions.The Plant journal : for cell and molecular biology · 2026Article
- Pleistocene Sea-Level Fluctuation Shapes Archipelago-Wide Population Structure in the Critically Endangered Lord Howe Island CockroachEcology and evolution · 2026Article
- Missing or Mis-Telling the Story? Trade-Offs for Restriction-Site Associated Compared to Whole Genome Sequencing.Molecular ecology · 2026Article
- Using Genome-Wide Association Studies to Reveal DArTseq and SNP Loci Associated with Agronomic Traits and Yield in Maize.Current issues in molecular biology · 2025Article
- DArTseq-Based, High-Throughput Identification of Novel Molecular Markers for the Detection of Fusarium Resistance in Maize.International journal of molecular sciences · 2025Article
- Dissecting the genetic and phenotypic basis of salinity tolerance in mungbean: insights from multi-stage phenotyping, GWAS and genomic prediction.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Exploring Genetic Diversity and Population Structure of Australian Passion Fruit Germplasm.Biotech (Basel (Switzerland)) · 2025Article
- The GenusPlants (Basel, Switzerland) · 2025Article
- A linkage map of Aegilops biuncialis reveals significant genomic rearrangements compared to bread wheat.The plant genome · 2025Article
- Genetic diversity and relationship of Bugesera and Rwamagana indigenous chicken populations with SASSO chickens using DArTseq SNPs.PloS one · 2025Article
- How many species are there? Lineage diversification and hidden speciation in Solanaceae from highland grasslands in southern South America.Annals of botany · 2024Article
- Floristic classifications and bioregionalizations are not predictors of intra-specific evolutionary patterns.Nature communications · 2024Article
- Advancements in noninvasive koala monitoring through combining Chlamydia detection with a targeted koala genotyping assay.Scientific reports · 2024Article
- Simulating Genetic Mixing in Strongly Structured Populations of the Threatened Southern Brown Bandicoot (Evolutionary applications · 2024Article
- Extent and patterns of morphological and molecular genetic diversity and population structure of Nigerian Taro cultivars.BMC plant biology · 2024Article
64 more citing papers are in PubMed but not listed here.
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3 authors.
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Abstract
The advantages of using molecular markers in modern genebanks are well documented. They are commonly used to understand the distribution of genetic diversity in populations and among species which is crucial for efficient management and effective utilization of germplasm collections. We describe the development of two types of DArT molecular marker platforms for the new oilseed crop lesquerella (Physaria spp.), a member of the Brassicaceae family, to characterize a collection in the National Plant Germplasm System (NPGS) with relatively little known in regards to the genetic diversity and traits. The two types of platforms were developed using a subset of the germplasm conserved ex situ consisting of 87 Physaria and 2 Paysonia accessions. The microarray DArT revealed a total of 2,833 polymorphic markers with an average genotype call rate of 98.4% and a scoring reproducibility of 99.7%. On the other hand, the DArTseq platform developed for SNP and DArT markers from short sequence reads showed a total of 27,748 high quality markers. Cluster analysis and principal coordinate analysis indicated that the different accessions were successfully classified by both systems based on species, by geographical source, and breeding status. In the germplasm set analyzed, which represented more than 80% of the P. fendleri collection, we observed that a substantial amount of variation exists in the species collection. These markers will be valuable in germplasm management studies and lesquerella breeding, and augment the microsatellite markers previously developed on the taxa.
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