Evidence map›Paper›PMID 23723977›Full record

ArticlePloS one2013

An extensive targeted proteomic analysis of disease-related protein biomarkers in urine from healthy donors.

Brian M Nolen, Lidiya S Orlichenko, Adele Marrangoni, Liudmila Velikokhatnaya, Denise Prosser, William E Grizzle, Kevin Ho, Frank J Jenkins, Dana H Bovbjerg, Anna E Lokshin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

  1. Trial
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  11. Urinary protein biomarkers in the early detection of lung cancer.Cancer prevention research (Philadelphia, Pa.) · 2015
    Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Brian M NolenUniversity of Pittsburgh Cancer Institute, Hillman Cancer Center, Pittsburgh, Pennsylvania, United States of America.
Lidiya S Orlichenko
Adele Marrangoni
Liudmila Velikokhatnaya
Denise Prosser
William E Grizzle
Kevin Ho
Frank J Jenkins
Dana H Bovbjerg
Anna E Lokshin
UPMC Hillman Cancer Center · USUniversity of Pittsburgh · USUniversity of Alabama at Birmingham · US

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Jessie Nedrow · 1988 to 2026
$158.0M
University of Pittsburgh Clinical and Translational Science InstituteUL1TR000005 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2012 to 2015
$50.8M
UNIVERSITY OF TEXAS MD ANDERSON SPORE IN OVARIAN CANCERP50CA083639 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BAST, ROBERT C · 1999 to 2015
$33.0M
Novel Serum, Plasma, and Urine Biomarkers of Ovarian CanP50CA105009 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI CRAMER, DANIEL WILLIAM · 2004 to 2010
$13.3M
UAB / UMN SPORE in Pancreatic CancerP50CA101955 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BUCHSBAUM, DONALD J · 2010 to 2014
$11.1M
PROTEOMIC/EPIDMIOLOGIC PATHS TO OVARIAN CANCER SCREENINGU01CA086381 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI CRAMER, DANIEL WILLIAM · 2000 to 2010
$9.0M
Urine and Serum Biomarkers for Screening and Diagnosis of Ovarian CancerR01CA108990 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LOKSHIN, ANNA E. · 2005 to 2014
$5.3M
Multiplexed Serum Biomarkers for Pancreatic CancerU01CA117452 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LOKSHIN, ANNA E. · 2005 to 2009
$2.7M
Breast Cancer Risk: Analysis of heightened HPA axis stress responsivityR01CA129557 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BOVBJERG, DANA H. · 2008 to 2012
$2.1M
Identification of Early Markers for Ovarian CancerR01CA098642 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LOKSHIN, ANNA E. · 2003 to 2006
$1.3M
NCATS NIH HHS UL1 TR000005NCI NIH HHS CA086381NCI NIH HHS CA105009NCI NIH HHS CA129557NCI NIH HHS P30 CA047904NCI NIH HHS P30CA047904NCI NIH HHS P50 CA083639NCI NIH HHS P50 CA105009NCI NIH HHS R01 570 CA098642NCI NIH HHS R01 CA098642NCI NIH HHS R01 CA108990NCI NIH HHS R01 CA129557NCI NIH HHS U01 CA086381NCI NIH HHS U01 CA117452NCI NIH HHS U01CA117452
6 · The paper itself

Abstract

The analysis of protein biomarkers in urine is expected to lead to advances in a variety of clinical settings. Several characteristics of urine including a low-protein matrix, ease of testing and a demonstrated proteomic stability offer distinct advantages over current widely used biofluids, serum and plasma. Improvements in our understanding of the urine proteome and in methods used in its evaluation will facilitate the clinical development of urinary protein biomarkers. Multiplexed bead-based immunoassays were utilized to evaluate 211 proteins in urines from 103 healthy donors. An additional 25 healthy donors provided serial urine samples over the course of two days in order to assess temporal variation in selected biomarkers. Nearly one-third of the evaluated biomarkers were detected in urine at levels greater than 1 ng/ml, representing a diverse panel of proteins with respect to structure, function and biological role. The presence of several biomarkers in urine was confirmed by western blot. Several methods of data normalization were employed to assess impact on biomarker variability. A complex pattern of correlations with urine creatinine, albumin and beta-2-microglobulin was observed indicating the presence of highly specific mechanisms of renal filtration. Further investigation of the urinary protein biomarkers identified in this preliminary study along with a consideration of the underlying proteomic trends suggested by these findings should lead to an improved capability to identify candidate biomarkers for clinical development.

Indexed as

DiseaseHealthAdultAgedAlbuminuriabeta 2-MicroglobulinBiomarkersBlotting, WesternCA-125 AntigenCreatinineFemaleHumansMaleMiddle AgedOsteopontinPrealbuminbeta 2-MicroglobulinBiomarkersCA-125 AntigenCreatinineOsteopontinPrealbuminProteinsProteomeWAP Four-Disulfide Core Domain Protein 2WFDC2 protein, human

Identifiers

PMID23723977
PMCPMC3665773
OpenAlexW1981310992

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.