Evidence map›Paper›PMID 23723351›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

piggyBac transposase tools for genome engineering.

Xianghong Li, Erin R Burnight, Ashley L Cooney, Nirav Malani, Troy Brady, Jeffry D Sander, Janice Staber, Sarah J Wheelan, J Keith Joung, Paul B McCray and 3 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 149 papers.

0numbers the graph read from it
0cells of the map it votes in
149citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

149 citing papers in PubMed.

  1. Mining and engineering of activeSynthetic and systems biotechnology · 2027
    Article
  2. Progresses of transposon research inSynthetic and systems biotechnology · 2026
    Review
  3. Article
  4. Transposase-Assisted Donor Tethering Boosts Large-Fragment HDR in Plants.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Improved vector toolkit for genome writing in mammalian cells.bioRxiv : the preprint server for biology · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

89 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Xianghong LiHoward Hughes Medical Institute and Department of Molecular Biology and Genetics, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Erin R Burnight
Ashley L Cooney
Nirav Malani
Troy Brady
Jeffry D Sander
Janice Staber
Sarah J Wheelan
J Keith Joung
Paul B McCray
Frederic D Bushman
Patrick L Sinn
Nancy L Craig

Funding

Pulmonary Toxicology Facility CoreP30ES005605 · NIEHS · UNIVERSITY OF IOWA · PI Brandi Janssen · 1990 to 2026
$40.5M
Vector Core-Core 2P30DK054759 · NIDDK · UNIVERSITY OF IOWA · PI Alejandro Antonio Pezzulo · 1998 to 2026
$30.5M
MOLECULAR IMMUNOLOGY AND TUMOR BIOLOGYT32CA009216 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI David Michael Langenau · 1985 to 2026
$10.6M
Molecular and Cellular Research to Advance Childhood HealthK12HD027748 · NICHD · UNIVERSITY OF IOWA · PI ALEXANDER G BASSUK · 2002 to 2026
$9.2M
Favored Sites for HIV Integration in the Human GenomeR01AI052845 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BUSHMAN, FREDERIC D · 2002 to 2017
$5.6M
ADVANCING ZINC FINGER NUCLEASES FOR TARGETED GENOME MANIPULATIONR01GM088040 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI JOUNG, J. KEITH, PETERSON, RANDALL T · 2009 to 2016
$4.5M
Massively Parallel Analysis of Integration in Therapeutic Gene TransferR01AI082020 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BUSHMAN, FREDERIC D · 2009 to 2018
$3.5M
Advancing stem cell technologies using engineered zinc finger proteinsDP1GM105378 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI JOUNG, J. KEITH · 2012 to 2014
$2.6M
Targeted integration of a DNA transposon-based nonviral vectorR01HL105821 · NHLBI · UNIVERSITY OF IOWA · PI SINN, PATRICK L · 2012 to 2016
$1.9M
Howard Hughes Medical InstituteNCCDPHP CDC HHS DP1 GM105378NCI NIH HHS T32 CA009216NHLBI NIH HHS R01 HL-105821NHLBI NIH HHS R01 HL105821NIAID NIH HHS AI 052845NIAID NIH HHS AI082020NIAID NIH HHS R01 AI052845NIAID NIH HHS R01 AI082020NICHD NIH HHS K12 HD027748NIDDK NIH HHS P30 DK054759NIDDK NIH HHS P30 DK-54759NIEHS NIH HHS P30 ES005605NIGMS NIH HHS DP1 GM105378NIGMS NIH HHS R01 GM088040
6 · The paper itself

Abstract

The transposon piggyBac is being used increasingly for genetic studies. Here, we describe modified versions of piggyBac transposase that have potentially wide-ranging applications, such as reversible transgenesis and modified targeting of insertions. piggyBac is distinguished by its ability to excise precisely, restoring the donor site to its pretransposon state. This characteristic makes piggyBac useful for reversible transgenesis, a potentially valuable feature when generating induced pluripotent stem cells without permanent alterations to genomic sequence. To avoid further genome modification following piggyBac excision by reintegration, we generated an excision competent/integration defective (Exc(+)Int(-)) transposase. Our findings also suggest the position of a target DNA-transposase interaction. Another goal of genome engineering is to develop reagents that can guide transgenes to preferred genomic regions. Others have shown that piggyBac transposase can be active when fused to a heterologous DNA-binding domain. An Exc(+)Int(-) transposase, the intrinsic targeting of which is defective, might also be a useful intermediate in generating a transposase whose integration activity could be rescued and redirected by fusion to a site-specific DNA-binding domain. We show that fusion to two designed zinc finger proteins rescued the Int(-) phenotype. Successful guided transgene integration into genomic DNA would have broad applications to gene therapy and molecular genetics. Thus, an Exc(+)Int(-) transposase is a potentially useful reagent for genome engineering and provides insight into the mechanism of transposase-target DNA interaction.

Indexed as

Amino Acid SequenceAnimalsDNA Transposable ElementsGenetic EngineeringGene Transfer TechniquesGenome, HumanHEK293 CellsHeLa CellsHumansMammalsMolecular Sequence DataMutagenesis, InsertionalNerve Tissue ProteinsPluripotent Stem CellsSaccharomyces cerevisiaeZinc FingersDNA Transposable ElementsNerve Tissue ProteinsPGBD1 protein, humanGULOPinduced pluripotent stem cell productionprotein-DNA interactionROSA26

Identifiers

PMID23723351
PMCPMC3690869

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.