Evidence map›Paper›PMID 23720792›Full record

ArticleJournal of clinical microbiology2013

Multicentric evaluation of a new real-time PCR assay for quantification of Cryptosporidium spp. and identification of Cryptosporidium parvum and Cryptosporidium hominis.

C Mary, E Chapey, E Dutoit, K Guyot, L Hasseine, F Jeddi, J Menotti, C Paraud, C Pomares, M Rabodonirina and 3 more

Open access · bronzeAbstract readEvaluation StudyMulticenter Study
In one paragraph

Article in Journal of clinical microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
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  4. [High prevalence ofMedecine tropicale et sante internationale · 2024
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  6. Evaluation of the Performance of the NovodiagPathogens (Basel, Switzerland) · 2023
    Article
  7. Article
  8. Article
  9. Cryptosporidiosis outbreak in Amazonia, French Guiana, 2018.PLoS neglected tropical diseases · 2022
    Article
  10. Article
  11. PersistentMicroorganisms · 2021
    Article
  12. Article
  13. Comparative Performance of Eight PCR Methods to DetectPathogens (Basel, Switzerland) · 2021
    Article
  14. Article
  15. DisseminatedIDCases · 2021
    Article
  16. Article
  17. DetectingThe American journal of tropical medicine and hygiene · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 1 country.

C MaryAix-Marseille Université, Faculté de Médecine, UMR MD3, and APHM, Hôpital de la Timone, Laboratoire de Parasitologie-Mycologie, Marseille, France. cmary@ap-hm.fr
E Chapey
E Dutoit
K Guyot
L Hasseine
F Jeddi
J Menotti
C Paraud
C Pomares
M Rabodonirina
A Rieux
F Derouin
ANOFEL Cryptosporidium National Network
Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail · FRCentre Hospitalier Universitaire de Nice · FRHospices Civils de Lyon · FRAix-Marseille Université · FRAssistance Publique – Hôpitaux de Paris · FRCentre Hospitalier Universitaire de Lille · FRCentre National de la Recherche Scientifique · FRHôpital de la Timone · FRHôpital Saint-Louis · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cryptosporidium is a protozoan parasite responsible for gastroenteritis, especially in immunocompromised patients. Laboratory diagnosis of cryptosporidiosis relies on microscopy, antigen detection, and nucleic acid detection and analysis. Among the numerous molecular targets available, the 18S rRNA gene displays the best sensitivity and sequence variations between species and can be used for molecular typing assays. This paper presents a new real-time PCR assay for the detection and quantification of all Cryptosporidium species associated with the identification of Cryptosporidium hominis and Cryptosporidium parvum. The sensitivity and specificity of this new PCR assay were assessed on a multicentric basis, using well-characterized Cryptosporidium-positive and -negative human stool samples, and the efficiencies of nine extraction methods were comparatively assessed using Cryptosporidium-seeded stool samples and phosphate-buffered saline samples. A comparison of extraction yields showed that the most efficient extraction method was the Boom technique in association with mechanical grinding, and column extraction showed higher binding capacity than extraction methods based on magnetic silica. Our PCR assay was able to quantify at least 300 oocysts per gram of stool. Satisfactory reproducibility between laboratories was observed. The two main species causing human disease, Cryptosporidium hominis and Cryptosporidium parvum, were identified using a duplex real-time PCR assay with specific TaqMan minor-groove-binding ligand (MGB) probes for the same amplicon. To conclude, this one-step quantitative PCR is well suited to the routine diagnosis of cryptosporidiosis since practical conditions, including DNA extraction, quantification using well-defined standards, and identification of the two main species infecting humans, have been positively assessed.

Indexed as

CryptosporidiosisCryptosporidiumHumansMolecular Diagnostic TechniquesParasite LoadReal-Time Polymerase Chain ReactionSensitivity and Specificity

Identifiers

PMID23720792
PMCPMC3719639
OpenAlexW2157550778

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.