Evidence map›Paper›PMID 23720757›Full record

ArticleThe Journal of biological chemistry2013

Glycoprotein biosynthesis in a eukaryote lacking the membrane protein Rft1.

Jennifer Jelk, Ningguo Gao, Mauro Serricchio, Aita Signorell, Remo S Schmidt, James D Bangs, Alvaro Acosta-Serrano, Mark A Lehrman, Peter Bütikofer, Anant K Menon

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Structure and Mechanism of the Lipid Flippase MurJ.Annual review of biochemistry · 2022
    Review
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  19. N-linked glycosylation in Archaea: a structural, functional, and genetic analysis.Microbiology and molecular biology reviews : MMBR · 2014
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Jennifer JelkDepartment of Biochemistry, Weill Cornell Medical College, New York, New York 10065, USA.
Ningguo Gao
Mauro Serricchio
Aita Signorell
Remo S Schmidt
James D Bangs
Alvaro Acosta-Serrano
Mark A Lehrman
Peter Bütikofer
Anant K Menon
University of Bern · CHCornell University · USThe University of Texas Southwestern Medical Center · USLiverpool School of Tropical Medicine · GBUniversity at Buffalo, State University of New York · US

Funding

Secretory Protein Trafficking and Folding in African TrypanosomesR01AI035739 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI BANGS, JAMES D. · 2000 to 2020
$6.6M
The N-Glycosylation Pathway And Signaling By Free Mannose-6-PhosphateR01GM038545 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI LEHRMAN, MARK · 1987 to 2017
$5.7M
Phospholipid Flip-flop in Biogenic MembranesR01GM071041 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI MENON, ANANT K · 2005 to 2013
$2.8M
N-Glycosylation And ER StressR56GM038545 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI LEHRMAN, MARK · 2008 to 2008
$385k
SECRETION AND PROTEIN TARGETING IN TRYPANOSOMA BRUCEIR29AI035739 · NIAID · UNIVERSITY OF WISCONSIN MADISON · PI BANGS, JAMES D. · 1995 to 1999
–
NIAID NIH HHS AI35739NIAID NIH HHS R01 AI035739NIAID NIH HHS R29 AI035739NIGMS NIH HHS GM38545NIGMS NIH HHS GM71041NIGMS NIH HHS R01 GM038545NIGMS NIH HHS R01 GM071041NIGMS NIH HHS R56 GM038545Wellcome Trust 093691MA
6 · The paper itself

Abstract

Mature dolichol-linked oligosaccharides (mDLOs) needed for eukaryotic protein N-glycosylation are synthesized by a multistep pathway in which the biosynthetic lipid intermediate Man5GlcNAc2-PP-dolichol (M5-DLO) flips from the cytoplasmic to the luminal face of the endoplasmic reticulum. The endoplasmic reticulum membrane protein Rft1 is intimately involved in mDLO biosynthesis. Yeast genetic analyses implicated Rft1 as the M5-DLO flippase, but because biochemical tests challenged this assignment, the function of Rft1 remains obscure. To understand the role of Rft1, we sought to analyze mDLO biosynthesis in vivo in the complete absence of the protein. Rft1 is essential for yeast viability, and no Rft1-null organisms are currently available. Here, we exploited Trypanosoma brucei (Tb), an early diverging eukaryote whose Rft1 homologue functions in yeast. We report that TbRft1-null procyclic trypanosomes grow nearly normally. They have normal steady-state levels of mDLO and significant N-glycosylation, indicating robust M5-DLO flippase activity. Remarkably, the mutant cells have 30-100-fold greater steady-state levels of M5-DLO than wild-type cells. All N-glycans in the TbRft1-null cells originate from mDLO indicating that the M5-DLO excess is not available for glycosylation. These results suggest that rather than facilitating M5-DLO flipping, Rft1 facilitates conversion of M5-DLO to mDLO by another mechanism, possibly by acting as an M5-DLO chaperone.

Indexed as

Electrophoresis, Polyacrylamide GelEndoplasmic ReticulumEukaryotic CellsFlow CytometryGlucoseGlycoproteinsGlycosylationLysosomal Membrane ProteinsMembrane GlycoproteinsMembrane ProteinsMembrane Transport ProteinsMicroscopy, FluorescenceModels, BiologicalMutationPolyisoprenyl Phosphate OligosaccharidesPolysaccharidesGlucoseGlycoproteinsLysosomal Membrane Proteinsmannosyl(5)-N-acetyl(2)-glucose diphosphate dolicholMembrane GlycoproteinsMembrane ProteinsMembrane Transport ProteinsPolyisoprenyl Phosphate OligosaccharidesPolysaccharidesProtozoan ProteinsRFT1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsEndoplasmic Reticulum (ER)FlippaseGlycobiologyGlycoprotein BiosynthesisLipid SynthesisMembrane ProteinsTrypanosoma brucei

Identifiers

PMID23720757
PMCPMC3711325
OpenAlexW1981878531

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.