Evidence map›Paper›PMID 23720742›Full record

ArticleThe Journal of biological chemistry2013

Regulation of the activity of lactate dehydrogenases from four lactic acid bacteria.

Anna Feldman-Salit, Silvio Hering, Hanan L Messiha, Nadine Veith, Vlad Cojocaru, Antje Sieg, Hans V Westerhoff, Bernd Kreikemeyer, Rebecca C Wade, Tomas Fiedler

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 70 citations in OpenAlex.

  1. A pleuromutilin-ciprofloxacin hybrid exhibits potent activity againstFrontiers in cellular and infection microbiology · 2026
    Article
  2. Article
  3. Lactate dehydrogenase is the Achilles' heel of Lyme disease bacteriumbioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Phenotypic Traits and Probiotic Functions ofFoods (Basel, Switzerland) · 2023
    Article
  11. Frontiers in cellular and infection microbiology · 2023
    Article
  12. Conversion of COProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Formation of Biofilm byFrontiers in microbiology · 2022
    Article
  19. Article
  20. Sugar Shock: ProbingFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Anna Feldman-SalitFrom the Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies, 69118 Heidelberg, Germany,; BioQuant and.
Silvio HeringInstitute of Medical Microbiology, Virology, and Hygiene, University Medicine Rostock, 18057 Rostock, Germany.
Hanan L MessihaManchester Centre for Integrative Systems Biology, MIB, The University of Manchester, Manchester M1 7DN, United Kingdom, and.
Nadine VeithFrom the Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies, 69118 Heidelberg, Germany,; BioQuant and.
Vlad CojocaruFrom the Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies, 69118 Heidelberg, Germany.
Antje SiegInstitute of Medical Microbiology, Virology, and Hygiene, University Medicine Rostock, 18057 Rostock, Germany.
Hans V WesterhoffManchester Centre for Integrative Systems Biology, MIB, The University of Manchester, Manchester M1 7DN, United Kingdom, and; Synthetic Systems Biology, SILS, the University of Amsterdam, and Molecular Cell Physiology, FALW, Netherlands Institute for Systems Biology, VU University Amsterdam, NL-1018 HV Amsterdam, The Netherlands.
Bernd KreikemeyerInstitute of Medical Microbiology, Virology, and Hygiene, University Medicine Rostock, 18057 Rostock, Germany.
Rebecca C WadeFrom the Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies, 69118 Heidelberg, Germany,; Center for Molecular Biology, Heidelberg University, 69120 Heidelberg, Germany,. Electronic address: rebecca.wade@h-its.org.
Tomas FiedlerInstitute of Medical Microbiology, Virology, and Hygiene, University Medicine Rostock, 18057 Rostock, Germany,. Electronic address: tomas.fiedler@med.uni-rostock.de.
Heidelberg Institute for Theoretical Studies · DEHeidelberg University · DEUniversity of Amsterdam · NLUniversity of Manchester · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C008219/1Biotechnology and Biological Sciences Research Council BB/I004696/1
6 · The paper itself

Abstract

Despite high similarity in sequence and catalytic properties, the l-lactate dehydrogenases (LDHs) in lactic acid bacteria (LAB) display differences in their regulation that may arise from their adaptation to different habitats. We combined experimental and computational approaches to investigate the effects of fructose 1,6-bisphosphate (FBP), phosphate (Pi), and ionic strength (NaCl concentration) on six LDHs from four LABs studied at pH 6 and pH 7. We found that 1) the extent of activation by FBP (Kact) differs. Lactobacillus plantarum LDH is not regulated by FBP, but the other LDHs are activated with increasing sensitivity in the following order: Enterococcus faecalis LDH2 ≤ Lactococcus lactis LDH2 < E. faecalis LDH1 < L. lactis LDH1 ≤ Streptococcus pyogenes LDH. This trend reflects the electrostatic properties in the allosteric binding site of the LDH enzymes. 2) For L. plantarum, S. pyogenes, and E. faecalis, the effects of Pi are distinguishable from the effect of changing ionic strength by adding NaCl. 3) Addition of Pi inhibits E. faecalis LDH2, whereas in the absence of FBP, Pi is an activator of S. pyogenes LDH, E. faecalis LDH1, and L. lactis LDH1 and LDH2 at pH 6. These effects can be interpreted by considering the computed binding affinities of Pi to the catalytic and allosteric binding sites of the enzymes modeled in protonation states corresponding to pH 6 and pH 7. Overall, the results show a subtle interplay among the effects of Pi, FBP, and pH that results in different regulatory effects on the LDHs of different LABs.

Indexed as

Allosteric RegulationBacteriaBinding SitesBiocatalysisCrystallography, X-RayEnzyme ActivationFructosediphosphatesHydrogen-Ion ConcentrationIsoenzymesKineticsLactate DehydrogenasesLactic AcidModels, BiologicalPhosphatesSodium ChlorideStatic Electricityfructose-1,6-diphosphateFructosediphosphatesIsoenzymesLactate DehydrogenasesLactic AcidPhosphatesSodium ChlorideAllosteric RegulationBacterial MetabolismDehydrogenaseEnzyme KineticsHomology ModelingLactate DehydrogenaseLactic Acid BacteriaMolecular Interaction FieldProtein Electrostatics

Identifiers

PMID23720742
PMCPMC3774398
OpenAlexW2169772650

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.