Evidence map›Paper›PMID 23720714›Full record

ArticleJournal of virology2013

Functional characterization of the alphavirus TF protein.

Jonathan E Snyder, Kirsten A Kulcsar, Kimberly L W Schultz, Catherine P Riley, Jacob T Neary, Scott Marr, Joyce Jose, Diane E Griffin, Richard J Kuhn

Abstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Integrated phenotypic screening and chemical proteomics identifies ETF1 ligands that modulate viral translation and replication.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Research trends on alphavirus receptors: a bibliometric analysis.Frontiers in cellular and infection microbiology · 2024
    Review
  19. Article
  20. Review

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jonathan E SnyderMarkey Center for Structural Biology, Department of Biological Sciences, Purdue University, West Lafayette, Indiana, USA.
Kirsten A Kulcsar
Kimberly L W Schultz
Catherine P Riley
Jacob T Neary
Scott Marr
Joyce Jose
Diane E Griffin
Richard J Kuhn

Funding

INDIANA CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTE (UL1): BPCAUL1RR025761 · NCRR · INDIANA UNIVERSITY INDIANAPOLIS · PI SHEKHAR, ANANTHA · 2008 to 2011
$21.0M
CONTROL OF ALPHAVIRUS REPLICATION IN THE NERVOUS SYSTEMR01NS038932 · NINDS · JOHNS HOPKINS UNIVERSITY · PI GRIFFIN, DIANE E · 2001 to 2016
$4.9M
MOLECULAR BASIS OF ALPHAVIRUS ASSEMBLYR01GM056279 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI KUHN, RICHARD J. · 1997 to 2014
$3.7M
BIOPHYS STUD OF PROTEINS, NUCLEIC ACIDS, AND VIRUSEST32GM008296 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI STAUFFACHER, CYNTHIA VIANNE · 1989 to 2012
$2.2M
NCRR NIH HHS RR025761NCRR NIH HHS UL1 RR025761NIGMS NIH HHS 5T32GM008296NIGMS NIH HHS GM56279NIGMS NIH HHS R01 GM056279NIGMS NIH HHS T32 GM008296NINDS NIH HHS NS038932NINDS NIH HHS R01 NS038932
6 · The paper itself

Abstract

Alphavirus dogma has long dictated the production of a discrete set of structural proteins during infection of a cell: capsid, pE2, 6K, and E1. However, bioinformatic analyses of alphavirus genomes (A. E. Firth, B. Y. Chung, M. N. Fleeton, and J. F. Atkins, Virol. J. 5:108, 2008) suggested that a ribosomal frameshifting event occurs during translation of the alphavirus structural polyprotein. Specifically, a frameshift event is suggested to occur during translation of the 6K gene, yielding production of a novel protein, termed transframe (TF), comprised of a C-terminal extension of the 6K protein in the -1 open reading frame (ORF). Here, we validate the findings of Firth and colleagues with respect to the production of the TF protein and begin to characterize the function of TF. Using a mass spectrometry-based approach, we identified TF in purified preparations of both Sindbis and Chikungunya virus particles. We next constructed a panel of Sindbis virus mutants with mutations which alter the production, size, or sequence of TF. We demonstrate that TF is not absolutely required in culture, although disrupting TF production leads to a decrease in virus particle release in both mammalian and insect cells. In a mouse neuropathogenesis model, mortality was <15% in animals infected with the TF mutants, whereas mortality was 95% in animals infected with the wild-type virus. Using a variety of additional assays, we demonstrate that TF retains ion-channel activity analogous to that of 6K and that lack of production of TF does not affect genome replication, particle infectivity, or envelope protein transit to the cell surface. The TF protein therefore represents a previously uncharacterized factor important for alphavirus assembly.

Indexed as

Gene Expression Regulation, ViralVirus AssemblyAlphavirus InfectionsAnimalsCell LineChikungunya virusDisease Models, AnimalInsectaMiceSindbis VirusSurvival AnalysisViral ProteinsVirus ReplicationViral Proteins

Identifiers

PMID23720714
PMCPMC3719798

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.