Evidence map›Paper›PMID 23717639›Full record

ArticlePloS one2013

The Pseudomonas aeruginosa catabolite repression control protein Crc is devoid of RNA binding activity.

Tetyana Milojevic, Irina Grishkovskaya, Elisabeth Sonnleitner, Kristina Djinovic-Carugo, Udo Bläsi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 55 citations in OpenAlex.

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  4. Broadly conserved FlgV controls flagellar assembly andbioRxiv : the preprint server for biology · 2024
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  8. Role of Two-Component System Networks in Pseudomonas aeruginosa Pathogenesis.Advances in experimental medicine and biology · 2022
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  9. Rewiring of Gene Expression inFrontiers in microbiology · 2022
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  11. Impacts of Small RNAs and Their Chaperones on Bacterial Pathogenicity.Frontiers in cellular and infection microbiology · 2021
    Review
  12. Hfq-Assisted RsmA Regulation Is Central toFrontiers in microbiology · 2020
    Article
  13. Full Transcriptomic Response ofFrontiers in microbiology · 2020
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  14. Review
  15. Fitting Pieces into the Puzzle ofJournal of bacteriology · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Tetyana MilojevicDepartment of Microbiology, Immunobiology and Genetics, Max F Perutz Laboratories, University of Vienna, Vienna, Austria.
Irina Grishkovskaya
Elisabeth Sonnleitner
Kristina Djinovic-Carugo
Udo Bläsi
Max Perutz Labs · ATUniversity of Ljubljana · SIUniversity of Vienna · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Crc protein has been shown to mediate catabolite repression control in Pseudomonas, leading to a preferential assimilation of carbon sources. It has been suggested that Crc acts as a translational repressor of mRNAs, encoding functions involved in uptake and breakdown of different carbon sources. Moreover, the regulatory RNA CrcZ, the level of which is increased in the presence of less preferred carbon sources, was suggested to bind to and sequester Crc, resulting in a relief of catabolite repression. Here, we determined the crystal structure of Pseudomonas aeruginosa Crc, a member of apurinic/apyrimidinic (AP) endonuclease family, at 1.8 Å. Although Crc displays high sequence similarity with its orthologs, there are amino acid alterations in the area corresponding to the active site in AP proteins. Unlike typical AP endonuclease family proteins, Crc has a reduced overall positive charge and the conserved positively charged amino-acid residues of the DNA-binding surface of AP proteins are partially substituted by negatively charged, polar and hydrophobic residues. Crc protein purified to homogeneity from P. aeruginosa did neither display DNase activity, nor did it bind to previously identified RNA substrates. Rather, the RNA chaperone Hfq was identified as a contaminant in His-tagged Crc preparations purified by one step Ni-affinity chromatography from Escherichia coli, and was shown to account for the RNA binding activity observed with the His-Crc preparations. Taken together, these data challenge a role of Crc as a direct translational repressor in carbon catabolite repression in P. aeruginosa.

Indexed as

Pseudomonas aeruginosaAmino Acid SequenceArtifactsBacterial ProteinsBinding SitesCrystallography, X-RayEscherichia coli ProteinsHost Factor 1 ProteinModels, MolecularMolecular Sequence DataProtein BindingProtein Structure, SecondaryRepressor ProteinsRNA, BacterialStructural Homology, ProteinSurface PropertiesBacterial Proteinscrc protein, PseudomonasEscherichia coli ProteinsHfq protein, E coliHost Factor 1 ProteinRepressor ProteinsRNA, Bacterial

Identifiers

PMID23717639
PMCPMC3662782
OpenAlexW2136902237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.