Evidence map›Paper›PMID 23717541›Full record

ArticlePloS one2013

Post-transcriptional dysregulation by miRNAs is implicated in the pathogenesis of gastrointestinal stromal tumor [GIST].

Lorna Kelly, Kenneth Bryan, Su Young Kim, Katherine A Janeway, J Keith Killian, Hans-Ulrich Schildhaus, Markku Miettinen, Lee Helman, Paul S Meltzer, Matt van de Rijn and 3 more

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Small Molecules in Rare Tumors: Emerging Role of MicroRNAs in GIST.International journal of molecular sciences · 2018
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. What Do We Know about the Role of miRNAs in Pediatric Sarcoma?International journal of molecular sciences · 2015
    Review
  13. Article
  14. Good survival outcome of metastatic SDH-deficient gastrointestinal stromal tumors harboring SDHA mutations.Genetics in medicine : official journal of the American College of Medical Genetics · 2015
    Article
  15. Review
  16. Review
  17. Article
  18. Review
  19. MiR-137 regulates epithelial-mesenchymal transition in gastrointestinal stromal tumor.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lorna KellyHistopathology Department, School of Medicine, Trinity College Dublin, Dublin, Ireland.
Kenneth Bryan
Su Young Kim
Katherine A Janeway
J Keith Killian
Hans-Ulrich Schildhaus
Markku Miettinen
Lee Helman
Paul S Meltzer
Matt van de Rijn
Maria Debiec-Rychter
Maureen O'Sullivan
NIH Pediatric and Wild-Type GIST Clinic

Funding

Functional Genomics of SarcomaZIABC010759 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MELTZER, PAUL S. · 2009 to 2025
$22.3M
Molecular Characterization of Leiomyosarcoma and GISTR01CA112270 · NCI · STANFORD UNIVERSITY · PI VAN DE RIJN, JAN MATT · 2005 to 2014
$3.0M
NCI NIH HHS R01 CA112270
6 · The paper itself

Abstract

In contrast to adult mutant gastrointestinal stromal tumors [GISTs], pediatric/wild-type GISTs remain poorly understood overall, given their lack of oncogenic activating tyrosine kinase mutations. These GISTs, with a predilection for gastric origin in female patients, show limited response to therapy with tyrosine kinase inhibitors and generally pursue a more indolent course, but still may prove fatal. Defective cellular respiration appears to underpin tumor development in these wild-type cases, which as a group lack expression of succinate dehydrogenase [SDH] B, a surrogate marker for respiratory chain metabolism. Yet, only a small subset of the wild-type tumors show mutations in the genes coding for the SDH subunits [SDHx]. To explore additional pathogenetic mechanisms in these wild-type GISTs, we elected to investigate post-transcriptional regulation of these tumors by conducting microRNA (miRNA) profiling of a mixed cohort of 73 cases including 18 gastric pediatric wild-type, 25 (20 gastric, 4 small bowel and 1 retroperitoneal) adult wild-type GISTs and 30 gastric adult mutant GISTs. By this approach we have identified distinct signatures for GIST subtypes which correlate tightly with clinico-pathological parameters. A cluster of miRNAs on 14q32 show strikingly different expression patterns amongst GISTs, a finding which appears to be explained at least in part by differential allelic methylation of this imprinted region. Small bowel and retroperitoneal wild-type GISTs segregate with adult mutant GISTs and express SDHB, while adult wild-type gastric GISTs are dispersed amongst adult mutant and pediatric wild-type cases, clustering in this situation on the basis of SDHB expression. Interestingly, global methylation analysis has recently similarly demonstrated that these wild-type, SDHB-immunonegative tumors show a distinct pattern compared with KIT and PDGFRA mutant tumors, which as a rule do express SDHB. All cases with Carney triad within our cohort cluster together tightly.

Indexed as

Gene Expression Regulation, NeoplasticRNA Processing, Post-TranscriptionalAdultAgedAged, 80 and overCell Line, TumorChildChromosomes, Human, Pair 14Cluster AnalysisComputational BiologyDNA MethylationFemaleGastrointestinal Stromal TumorsGene Expression ProfilingHumansMaleMicroRNAsRNA, MessengerSDHB protein, humanSuccinate Dehydrogenase

Identifiers

PMID23717541
PMCPMC3663836

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.