Evidence map›Paper›PMID 23716696›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Ypt1 recruits the Atg1 kinase to the preautophagosomal structure.

Juan Wang, Shekar Menon, Akinori Yamasaki, Hui-Ting Chou, Thomas Walz, Yu Jiang, Susan Ferro-Novick

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 128 citations in OpenAlex.

  1. Review
  2. Article
  3. The role of autophagy in protozoan infections.Frontiers in cellular and infection microbiology · 2026
    Review
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21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Juan WangDepartment of Cellular and Molecular Medicine and Howard Hughes Medical Institute, University of California at San Diego, La Jolla, CA 92093-0668, USA.
Shekar Menon
Akinori Yamasaki
Hui-Ting Chou
Thomas Walz
Yu Jiang
Susan Ferro-Novick
Howard Hughes Medical Institute · USUniversity of California, San Diego · USHarvard University · USUniversity of Pittsburgh · US

Funding

The Role of FKBP38 in tumorigenesis associated with Tsc deficiencyR01CA129821 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JIANG, YU · 2008 to 2012
$1.4M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA129821NIGMS NIH HHS P01 GM0622580
6 · The paper itself

Abstract

When macroautophagy, a catabolic process that rids the cells of unwanted proteins, is initiated, 30-60 nm Atg9 vesicles move from the Golgi to the preautophagosomal structure (PAS) to initiate autophagosome formation. The Rab GTPase Ypt1 and its mammalian homolog Rab1 regulate macroautophagy and two other trafficking events: endoplasmic reticulum-Golgi and intra-Golgi traffic. How a Rab, which localizes to three distinct cellular locations, achieves specificity is unknown. Here we show that transport protein particle III (TRAPPIII), a conserved autophagy-specific guanine nucleotide exchange factor for Ypt1/Rab1, is recruited to the PAS by Atg17. We also show that activated Ypt1 recruits the putative membrane curvature sensor Atg1 to the PAS, bringing it into proximity to its binding partner Atg17. Since Atg17 resides at the PAS, these events ensure that Atg1 will specifically localize to the PAS and not to the other compartments where Ypt1 resides. We propose that Ypt1 regulates Atg9 vesicle tethering by modulating the delivery of Atg1 to the PAS. These events appear to be conserved in higher cells.

Indexed as

AnimalsAutophagyAutophagy-Related Protein-1 HomologAutophagy-Related ProteinsCarrier ProteinsChlorocebus aethiopsCOS CellsGolgi ApparatusGreen Fluorescent ProteinsGuanine Nucleotide Exchange FactorsHeLa CellsHumansImmunoblottingIntracellular Signaling Peptides and ProteinsMembrane ProteinsMiceAtg17 protein, S cerevisiaeATG1 protein, S cerevisiaeATG9 protein, S cerevisiaeAutophagy-Related Protein-1 HomologAutophagy-Related ProteinsCarrier ProteinsGreen Fluorescent ProteinsGuanine Nucleotide Exchange FactorsIntracellular Signaling Peptides and ProteinsMembrane ProteinsProtein KinasesProtein Serine-Threonine Kinasesrab1 GTP-Binding Proteinsrab GTP-Binding ProteinsSaccharomyces cerevisiae Proteinstransport protein particle, TRAPPULK1 protein, humanVesicular Transport ProteinsYPT1 protein, S cerevisiaeGEFmembrane tethering

Identifiers

PMID23716696
PMCPMC3683756
OpenAlexW2028211975

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.