Evidence map›Paper›PMID 23716694›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Structure-based design and mechanisms of allosteric inhibitors for mitochondrial branched-chain α-ketoacid dehydrogenase kinase.

Shih-Chia Tso, Xiangbing Qi, Wen-Jun Gui, Jacinta L Chuang, Lorraine K Morlock, Amy L Wallace, Kamran Ahmed, Sunil Laxman, Philippe M Campeau, Brendan H Lee and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it, 71 citations in OpenAlex.

  1. Pooled it
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  16. Urine and FecalMetabolites · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Shih-Chia TsoDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Xiangbing Qi
Wen-Jun Gui
Jacinta L Chuang
Lorraine K Morlock
Amy L Wallace
Kamran Ahmed
Sunil Laxman
Philippe M Campeau
Brendan H Lee
Susan M Hutson
Benjamin P Tu
Noelle S Williams
Uttam K Tambar
R Max Wynn
David T Chuang
Indiana University School of MedicineIndiana University – Purdue University Indianapolis · USThe University of Texas Southwestern Medical Center · USBaylor College of Medicine · USVirginia Tech · US

Funding

Structure and Function of Mitochondrial Protein KinasesR01DK062306 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI CHUANG, DAVID T · 2003 to 2018
$5.4M
Stereoselective Rearrangements for the Synthesis of Bioactive Small MoleculesR01GM102604 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI TAMBAR, UTTAM KRISHAN · 2012 to 2024
$5.0M
INBORN ERRORS OF METABOLISM IN CELL CULTURER01DK026758 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI CHUANG, DAVID T · 1986 to 2010
$4.3M
Phenylbutyrate therapy for maple syrup urine diseaseR01DK092921 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI LEE, BRENDAN · 2011 to 2015
$3.3M
Structure and Function of Mitochondrial Protein KinasesR56DK062306 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI CHUANG, DAVID T · 2008 to 2014
$397k
Howard Hughes Medical InstituteNIDDK NIH HHS DK26758NIDDK NIH HHS DK62306NIDDK NIH HHS DK92921NIDDK NIH HHS R01 DK026758NIDDK NIH HHS R01 DK062306NIDDK NIH HHS R01 DK092921NIDDK NIH HHS R56 DK062306NIGMS NIH HHS R01 GM102604
6 · The paper itself

Abstract

The branched-chain amino acids (BCAAs) leucine, isoleucine, and valine are elevated in maple syrup urine disease, heart failure, obesity, and type 2 diabetes. BCAA homeostasis is controlled by the mitochondrial branched-chain α-ketoacid dehydrogenase complex (BCKDC), which is negatively regulated by the specific BCKD kinase (BDK). Here, we used structure-based design to develop a BDK inhibitor, (S)-α-chloro-phenylpropionic acid [(S)-CPP]. Crystal structures of the BDK-(S)-CPP complex show that (S)-CPP binds to a unique allosteric site in the N-terminal domain, triggering helix movements in BDK. These conformational changes are communicated to the lipoyl-binding pocket, which nullifies BDK activity by blocking its binding to the BCKDC core. Administration of (S)-CPP to mice leads to the full activation and dephosphorylation of BCKDC with significant reduction in plasma BCAA concentrations. The results buttress the concept of targeting mitochondrial BDK as a pharmacological approach to mitigate BCAA accumulation in metabolic diseases and heart failure.

Indexed as

Protein Structure, TertiaryAllosteric RegulationAnimalsBinding SitesChromatography, LiquidCrystallography, X-RayIsoleucineKineticsLeucineMaleMiceMice, Inbred ICRMitochondrial ProteinsModels, MolecularMolecular StructureMutation(3-methyl-2-oxobutanoate dehydrogenase (lipoamide)) kinaseIsoleucineLeucineMitochondrial Proteinsphenylpropiolic acidPhenylpropionatesProtein Kinase InhibitorsProtein KinasesValineallosteric mechanismsbranched-chain α-ketoacid dehydrogenase kinase inhibitorin vivo kinase inhibitor studieskinase-inhibitor complex structuresstructure-based inhibitor design

Identifiers

PMID23716694
PMCPMC3683707
OpenAlexW2171427533

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.