Evidence map›Paper›PMID 23716667›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Translation initiation factor eIF3h targets specific transcripts to polysomes during embryogenesis.

Avik Choudhuri, Umadas Maitra, Todd Evans

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 72 citations in OpenAlex.

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  10. A genetic screen identifiesmicroPublication biology · 2024
    Article
  11. bioRxiv : the preprint server for biology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Avik ChoudhuriDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine of Yeshiva University, Bronx, NY 10461, USA.
Umadas Maitra
Todd Evans
Albert Einstein College of Medicine · USCornell University · USYeshiva University · US

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
Regulation of Embryonic Erythropoiesis by BMP SignalingR37HL056182 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI EVANS, TODD R · 2009 to 2016
$3.2M
INITIATION FACTORS IN EUKARYOTIC PROTEIN BIOSYNTHESISR01GM015399 · NIGMS · YESHIVA UNIVERSITY · PI MAITRA, UMADAS · 1985 to 2005
$3.2M
Regulation of Embryonic Erythropoiesis by BMP SignalingR01HL056182 · NHLBI · YESHIVA UNIVERSITY · PI EVANS, TODD R · 1997 to 2008
$3.1M
A molecular pathway controlling cardiomyocyte specification.R01HL111400 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI EVANS, TODD R · 2012 to 2016
$2.1M
NCI NIH HHS P30 CA013330NCI NIH HHS P30CA13330NHLBI NIH HHS HL056182NHLBI NIH HHS HL111400NHLBI NIH HHS R01 HL056182NHLBI NIH HHS R01 HL111400NHLBI NIH HHS R37 HL056182NIGMS NIH HHS GM15399NIGMS NIH HHS R01 GM015399
6 · The paper itself

Abstract

Eukaryotic translation initiation factor 3 (eIF3) plays a central role in translation initiation and consists of five core (conserved) subunits present in both budding yeast and higher eukaryotes. Higher eukaryotic eIF3 contains additional (noncore or nonconserved) subunits of poorly defined function, including sub-unit h (eIF3h), which in zebrafish is encoded by two distinct genes (eif3ha and eif3hb). Previously we showed that eif3ha encodes the predominant isoform during zebrafish embryogenesis and that depletion of this factor causes defects in the development of the brain and eyes. To investigate the molecular mechanism governing this regulation, we developed a genome-wide polysome-profiling strategy using stage-matched WT and eif3ha morphant zebrafish embryos. This strategy identified a large set of predominantly neural-associated translationally regulated mRNAs. A striking finding was a cohort of lens-associated crystallin isoform mRNAs lost from the eif3ha morphant polysomes, revealing a mechanism by which lens development is translationally controlled. We show that both UTR sequences of a targeted crystallin transcript are necessary but not sufficient for translational regulation by eif3ha. Therefore, our study reveals the role of a noncore eIF3 subunit in modulating a specific developmental program by regulating translation of defined transcripts and highlights the potential of the zebrafish system to identify translational regulatory mechanisms controlling vertebrate development.

Indexed as

AnimalsBlotting, WesternEmbryo, NonmammalianEukaryotic Initiation Factor-3gamma-CrystallinsGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Knockdown TechniquesPolyribosomesProtein BiosynthesisProtein SubunitsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerTranscription, GeneticZebrafishZebrafish ProteinsEukaryotic Initiation Factor-3gamma-CrystallinsProtein SubunitsRNA, MessengerZebrafish ProteinsCrygm2dRNA sequencing

Identifiers

PMID23716667
PMCPMC3683746
OpenAlexW2023324723

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.