Evidence map›Paper›PMID 23716051›Full record

ArticleAntimicrobial agents and chemotherapy2013

Bulky "gatekeeper" residue changes the cosubstrate specificity of aminoglycoside 2''-phosphotransferase IIa.

Monolekha Bhattacharya, Marta Toth, Clyde A Smith, Sergei B Vakulenko

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Monolekha BhattacharyaDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana, USA.
Marta Toth
Clyde A Smith
Sergei B Vakulenko
University of Notre Dame · USStanford University · US

Funding

Aminoglycoside Resistance in EnterococcusR01AI057393 · NIAID · UNIVERSITY OF NOTRE DAME · PI VAKULENKO, SERGEI · 2006 to 2015
$3.5M
NIAID NIH HHS R011AI0899726NIAID NIH HHS R01 AI057393
6 · The paper itself

Abstract

The aminoglycoside 2"-phosphotransferases APH(2")-IIa and APH(2")-IVa can utilize ATP and GTP as cosubstrates, since both enzymes possess overlapping but discrete structural templates for ATP and GTP binding. APH(2″)-IIIa uses GTP exclusively, because its ATP-binding template is blocked by a bulky tyrosine "gatekeeper" residue. Replacement of the "gatekeeper" residues M85 and F95 in APH(2")-IIa and APH(2")-IVa, respectively, by tyrosine does not significantly change the antibiotic susceptibility profiles produced by the enzymes. In APH(2")-IIa, M85Y substitution results in an ~10-fold decrease in the K(m) value of GTP and an ~320-fold increase in the K(m) value of ATP. In APH(2")-IVa, F95Y substitution results in a modest decrease in the K(m) values of both GTP and ATP. Structural analysis indicates that in the APH(2")-IIa M85Y mutant, tyrosine blocks access of ATP to the correct position in the binding site, while the larger nucleoside triphosphate (NTP)-binding pocket of the APH(2")-IVa F95Y mutant allows the tyrosine to move away, thus giving access to the ATP-binding template.

Indexed as

Adenosine TriphosphateAmino Acid SubstitutionAminoglycosidesAnti-Bacterial AgentsBacterial ProteinsBinding SitesEscherichia coliGenes, BacterialGenetic VectorsGuanosine TriphosphateMicrobial Sensitivity TestsMutagenesis, Site-DirectedPhosphotransferases (Alcohol Group Acceptor)Protein Structure, SecondarySubstrate SpecificityTyrosineAdenosine Triphosphateaminoglycoside 2''-phosphotransferaseAminoglycosidesAnti-Bacterial AgentsBacterial ProteinsGuanosine TriphosphatePhosphotransferases (Alcohol Group Acceptor)Tyrosine

Identifiers

PMID23716051
PMCPMC3719757
OpenAlexW2158891434

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.