Evidence map›Paper›PMID 23715658›Full record

ArticleThe Journal of infectious diseases2013

Analysis of nontypeable haemophilus influenzae phase-variable genes during experimental human nasopharyngeal colonization.

Jessica Poole, Eric Foster, Kathryn Chaloner, Jason Hunt, Michael P Jennings, Thomas Bair, Kevin Knudtson, Erik Christensen, Robert S Munson, Patricia L Winokur and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Exploiting haem-iron dependence of nontypeableFrontiers in cellular and infection microbiology · 2025
    Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Gene Expression Regulation in Airway Pathogens: Importance for Otitis Media.Frontiers in cellular and infection microbiology · 2022
    Review
  10. Article
  11. NontypeableBiofilm · 2020
    Article
  12. [Microbiology of chronic rhinosinusitis with different clinical phenotypes].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. A Bacterial Epigenetic Switch in Non-typeableFrontiers in cellular and infection microbiology · 2020
    Article
  17. Article
  18. Article
  19. Analysis of Invasive NontypeableInfection and immunity · 2019
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 4 countries.

Jessica PooleDepartment of Microbiology, University of Iowa, Iowa City, IA 52242, USA.
Eric Foster
Kathryn Chaloner
Jason Hunt
Michael P Jennings
Thomas Bair
Kevin Knudtson
Erik Christensen
Robert S Munson
Patricia L Winokur
Michael A Apicella
Czech Academy of Sciences, Institute of Microbiology · CZCancer Research And Biostatistics · USUniversity of Iowa · USBioinformatics Institute · SGGriffith University · AUNationwide Children's Hospital · US

Funding

Pulmonary Toxicology Facility CoreP30ES005605 · NIEHS · UNIVERSITY OF IOWA · PI HANS-JOACHIM LEHMLER · 1990 to 2026
$40.5M
University of Iowa Clinical and Translational Science ProgramUL1TR000442 · NCATS · UNIVERSITY OF IOWA · PI ROSENTHAL, GARY E · 2012 to 2013
$10.0M
LIPOOLIGOSACCHARIDES OF HAEMOPHILUS INFLUENZAER01AI024616 · NIAID · UNIVERSITY OF IOWA · PI APICELLA, MICHAEL A. · 1988 to 2014
$6.0M
LIPOOLIGOSACCHARIDES OF HAEMOPHILUS INFLUENZAER37AI024616 · NIAID · UNIVERSITY OF IOWA · PI APICELLA, MICHAEL A. · 1994 to 2003
$1.9M
H. influenzae: Role of Sialic Acid in VirulenceR56AI024616 · NIAID · UNIVERSITY OF IOWA · PI APICELLA, MICHAEL A. · 2009 to 2009
$649k
VIRAL RESPIRATORY PATHOGENS RESEARCH UNIT /VRPRU/-266030040-266030040N01AI030040 · NIAID · UNIVERSITY OF IOWA · PI APICELLA, MICHAEL A. · 2003 to 2006
–
NCATS NIH HHS UL1 TR000442NCATS NIH HHS UL1 TR00442NIAID NIH HHS AI024616NIAID NIH HHS AI30040NIAID NIH HHS N01 AI030040NIAID NIH HHS R01 AI024616NIAID NIH HHS R37 AI024616NIAID NIH HHS R56 AI024616NIEHS NIH HHS P30 ES005605
6 · The paper itself

Abstract

backgroundStudies of nontypeable Haemophilus influenzae (NTHi) have demonstrated that a number of genes associated with infectivity have long repeat regions associated with phase variation in expression of the respective gene. The purpose of this study was to determine the genes that underwent phase variation during a 6-day period of experimental human nasopharyngeal colonization.

methodsStrain NTHi 2019Str(R)1 was used to colonize the nasopharynx of human subjects in a study of experimental colonization. Thirteen phase-variable genes were analyzed in NTHi 2019Str(R)1. Samples of NTHi 2019Str(R)1 were cultured from subjects during the 6-day colonization period. We used capillary electrophoresis and Roche 454 pyrosequencing to determine the number of repeats in each gene from each sample.

resultsA significant number of samples switched licA and igaB from phase off in the inoculated strain to phase on during the 4-day period of observation. lex2A also showed variability as compared to baseline, but the differences were not significant. The remaining genes showed no evidence of phase variation.

conclusionsOur studies suggest that the phase-on genotypes of licA and igaB are important for early human nasopharynx colonization. lex2A showed a trend from phase off to phase on, suggesting a potentially important role in the colonization process.

Indexed as

Antigenic VariationGene Expression ProfilingAntigens, BacterialCarrier StateElectrophoresis, CapillaryHaemophilus InfectionsHaemophilus influenzaeHumansModels, TheoreticalNasopharynxSequence Analysis, DNAAntigens, BacterialHaemophilus influenzaeigaBlex2A nasopharyngeal colonizationlicAphase variation

Identifiers

PMID23715658
PMCPMC3733508
OpenAlexW2141040405

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.