Evidence map›Paper›PMID 23715154›Full record

ArticleCancer discovery2013

Metabolic and functional genomic studies identify deoxythymidylate kinase as a target in LKB1-mutant lung cancer.

Yan Liu, Kevin Marks, Glenn S Cowley, Julian Carretero, Qingsong Liu, Thomas J F Nieland, Chunxiao Xu, Travis J Cohoon, Peng Gao, Yong Zhang and 30 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer discovery, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 151 citations in OpenAlex.

  1. Review
  2. PARP1 Suppression Drives ROS Resistance in Aneuploid Cancer Cells.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Transcriptional repression by HDAC3 mediates T cell exclusion fromProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Genome-wide CRISPR screens in spheroid culture reveal that the tumor suppressor LKB1 inhibits growth via the PIKFYVE lipid kinase.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Histone Deacetylase 6 Inhibition Exploits Selective Metabolic Vulnerabilities in LKB1 Mutant, KRAS Driven NSCLC.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2023
    Article
  15. The evolving landscape of involvement of DTYMK enzymes in cancer.Medical oncology (Northwood, London, England) · 2023
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

40 authors at 6 institutions in 1 country.

Yan LiuDepartment of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Kevin Marks
Glenn S Cowley
Julian Carretero
Qingsong Liu
Thomas J F Nieland
Chunxiao Xu
Travis J Cohoon
Peng Gao
Yong Zhang
Zhao Chen
Abigail B Altabef
Jeremy H Tchaicha
Xiaoxu Wang
Sung Choe
Edward M Driggers
Jianming Zhang
Sean T Bailey
Norman E Sharpless
D Neil Hayes
Nirali M Patel
Pasi A Janne
Nabeel Bardeesy
Jeffrey A Engelman
Brendan D Manning
Reuben J Shaw
John M Asara
Ralph Scully
Alec Kimmelman
Lauren A Byers
Don L Gibbons
Ignacio I Wistuba
John V Heymach
David J Kwiatkowski
William Y Kim
Andrew L Kung
Nathanael S Gray
David E Root
Lewis C Cantley
Kwok-Kin Wong
Harvard University · USMassachusetts General Hospital · USBeth Israel Deaconess Medical Center · USBroad Institute · USSalk Institute for Biological Studies · USDana-Farber/Harvard Cancer Center · US

Funding

Tuberous Sclerosis-Pathway and PathogenesisP01CA120964 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI David J. Kwiatkowski · 2007 to 2026
$35.9M
StructureP01CA154303 · NCI · DANA-FARBER CANCER INST · PI JANNE, PASI A · 2012 to 2021
$17.8M
Translational studies of Hsp90 inhibitors in NSCLCP50CA090578 · NCI · DANA-FARBER CANCER INST · PI JOHNSON, BRUCE D · 2008 to 2012
$11.4M
MUC1-C Oncoprotein Evades Immune Destruction in Non-small Cell Lung CancerR01CA166480 · NCI · DANA-FARBER CANCER INST · PI KUFE, DONALD W., WONG, KWOK KIN · 2012 to 2021
$6.3M
ANALYSIS OF BRCA1 RECOMBINATION FUNCTIONSR01CA095175 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI SCULLY, RALPH · 2002 to 2021
$4.9M
Therapeutic strategies for specific subsets of KRAS mutant lung cancersR01CA140594 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WONG, KWOK KIN · 2009 to 2017
$4.5M
LKB1 tumor suppressor and human cancerU01CA141576 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI CASTRILLON, DIEGO H · 2009 to 2013
$4.0M
DIFFERENTIATING AGENTS IN HEMATOLOGIC MALIGNANCIESR01CA042802 · NCI · DANA-FARBER CANCER INSTITUTE · PI KUFE, DONALD W. · 1986 to 2012
$3.8M
In vivo analysis of EGFR mutant driven lung cancers responses to radiation therapR01CA122794 · NCI · DANA-FARBER CANCER INST · PI WONG, KWOK KIN · 2006 to 2015
$2.8M
The chromatin response in mammalian double strand break repairR01GM073894 · NIGMS · BETH ISRAEL DEACONESS MEDICAL CENTER · PI SCULLY, RALPH · 2005 to 2014
$2.5M
Investigating the Role of Autophagy in Pancreatic Cancer Radiation ResistanceR01CA157490 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KIMMELMAN, ALEC · 2011 to 2018
$2.5M
In vivo murine models of metastasis for therapeutic testingR01CA163896 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SHARPLESS, NORMAN E, WONG, KWOK KIN · 2012 to 2016
$2.0M
NCI NIH HHS CA122794NCI NIH HHS CA140594NCI NIH HHS CA154303NCI NIH HHS CA163896NCI NIH HHS CA166480NCI NIH HHS K08 CA151651NCI NIH HHS P01 CA120964NCI NIH HHS P01 CA154303NCI NIH HHS P50 CA090578NCI NIH HHS P50CA090578NCI NIH HHS R01 CA042802NCI NIH HHS R01 CA095175NCI NIH HHS R01 CA122794NCI NIH HHS R01 CA140594NCI NIH HHS R01 CA142794NCI NIH HHS R01 CA157490NCI NIH HHS R01 CA163896NCI NIH HHS R01 CA166480NCI NIH HHS U01 CA141576NIGMS NIH HHS R01 GM073894
6 · The paper itself

Abstract

The LKB1/STK11 tumor suppressor encodes a serine/threonine kinase, which coordinates cell growth, polarity, motility, and metabolism. In non-small cell lung carcinoma, LKB1 is somatically inactivated in 25% to 30% of cases, often concurrently with activating KRAS mutations. Here, we used an integrative approach to define novel therapeutic targets in KRAS-driven LKB1-mutant lung cancers. High-throughput RNA interference screens in lung cancer cell lines from genetically engineered mouse models driven by activated KRAS with or without coincident Lkb1 deletion led to the identification of Dtymk, encoding deoxythymidylate kinase (DTYMK), which catalyzes dTTP biosynthesis, as synthetically lethal with Lkb1 deficiency in mouse and human lung cancer lines. Global metabolite profiling showed that Lkb1-null cells had a striking decrease in multiple nucleotide metabolites as compared with the Lkb1-wild-type cells. Thus, LKB1-mutant lung cancers have deficits in nucleotide metabolism that confer hypersensitivity to DTYMK inhibition, suggesting that DTYMK is a potential therapeutic target in this aggressive subset of tumors.

Indexed as

AMP-Activated Protein Kinase KinasesAMP-Activated Protein KinasesAnimalsCarcinoma, Non-Small-Cell LungCell DeathCell Line, TumorDNA DamageDNA ReplicationGene Knockdown TechniquesGenomicsHigh-Throughput Screening AssaysHumansLung NeoplasmsMetabolomicsMiceModels, GeneticAMP-Activated Protein Kinase KinasesAMP-Activated Protein KinasesdTMP kinaseHras protein, mouseNucleoside-Phosphate KinaseProtein Serine-Threonine KinasesProto-Oncogene Proteins p21(ras)STK11 protein, humanStk11 protein, mousethymidine 5'-triphosphateThymine Nucleotides

Identifiers

PMID23715154
PMCPMC3753578
OpenAlexW2116716449

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.