Evidence map›Paper›PMID 23714778›Full record

ArticleThe EMBO journal2013

Tdrkh is essential for spermatogenesis and participates in primary piRNA biogenesis in the germline.

Jonathan P Saxe, Mengjie Chen, Hongyu Zhao, Haifan Lin

Abstract read
In one paragraph

Article in The EMBO journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed.

  1. Spatiotemporal control of PIWI compartmentalization by mitochondrial scaffolds defines pachytene piRNA pathway organization.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jonathan P SaxeYale Stem Cell Center, Yale University, New Haven, CT 06519, USA.
Mengjie Chen
Hongyu Zhao
Haifan Lin

Funding

Stem Cell Mechanism in the Murine GermlineR01HD042012 · NICHD · YALE UNIVERSITY · PI QI, HONGYING · 2002 to 2022
$4.2M
Function of PIW1/Argonuate Proteins in SpermatogenesisR37HD042012 · NICHD · YALE UNIVERSITY · PI LIN, HAIFAN · 2013 to 2019
$2.8M
NICHD NIH HHS R01 HD042012NICHD NIH HHS R01HD42012NICHD NIH HHS R37 HD042012
6 · The paper itself

Abstract

Piwi proteins and Piwi-interacting RNAs (piRNAs) repress transposition, regulate translation, and guide epigenetic programming in the germline. Here, we show that an evolutionarily conserved Tudor and KH domain-containing protein, Tdrkh (a.k.a. Tdrd2), is required for spermatogenesis and involved in piRNA biogenesis. Tdrkh partners with Miwi and Miwi2 via symmetrically dimethylated arginine residues in Miwi and Miwi2. Tdrkh is a mitochondrial protein often juxtaposed to pi-bodies and piP-bodies and is required for Tdrd1 cytoplasmic localization and Miwi2 nuclear localization. Tdrkh mutants display meiotic arrest at the zygotene stage, attenuate methylation of Line1 DNA, and upregulate Line1 RNA and protein, without inducing apoptosis. Furthermore, Tdrkh mutants have severely reduced levels of mature piRNAs but accumulate a distinct population of 1'U-containing, 2'O-methylated 31-37 nt RNAs that largely complement the missing mature piRNAs. Our results demonstrate that the primary piRNA biogenesis pathway involves 3'→5' processing of 31-37 nt intermediates and that Tdrkh promotes this final step of piRNA biogenesis but not the ping-pong cycle. These results shed light on mechanisms underlying primary piRNA biogenesis, an area in which information is conspicuously absent.

Indexed as

AnimalsApoptosisArginineArgonaute ProteinsCell NucleusCytoplasmDNA MethylationIntegrasesMaleMeiosisMiceMice, KnockoutMice, TransgenicMicrobodiesMitochondriaRNA-Binding ProteinsArginineArgonaute ProteinsCre recombinaseIntegrasesPiwil1 protein, mousePIWIL4 protein, mouseRNA-Binding ProteinsRNA, Small InterferingTdrkh protein, mouse

Identifiers

PMID23714778
PMCPMC3981179

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.