Evidence map›Paper›PMID 23713778›Full record

ReviewCurrent pharmaceutical design2014

Weakly stable regions and protein-protein interactions in beta-barrel membrane proteins.

Hammad Naveed, Jie Liang

Abstract readReview
In one paragraph

Review in Current pharmaceutical design, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Porin from Marine BacteriumMolecules (Basel, Switzerland) · 2020
    Article
  4. Article
  5. High-resolution structure prediction ofProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  6. Probing Oligomerized Conformations of Defensin in the Membrane.Methods in molecular biology (Clifton, N.J.) · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Hammad Naveed
Jie LiangDepartment of Bioengineering, University of Illinois at Chicago, Chicago, IL, 60607, USA. jliang@uic.edu.

Funding

Computational assembly of beta-barrel membrane proteinsR01GM079804 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LIANG, JIE · 2007 to 2016
$2.8M
NIGMS NIH HHS GM079804NIGMS NIH HHS R01 GM079804
6 · The paper itself

Abstract

We briefly discuss recent progress in computational characterization of the sequence and structural properties of β-barrel membrane properties. We discuss the emerging concept of weakly stable regions in β-barrel membrane proteins, computational methods to identify these regions and mechanisms adopted by β-barrel membrane proteins in nature to stabilize them. We further discuss computational methods to identify protein-protein interactions in β-barrel membrane proteins and recent experimental studies that aim at altering the biophysical properties including oligomerization state and stability of β-barrel membrane proteins based on the emerging organization principles of these proteins from recent computational studies.

Indexed as

Computational BiologyProtein MultimerizationBinding SitesBiophysicsHumansMembrane ProteinsModels, MolecularProtein ConformationProtein Interaction MappingProtein StabilityMembrane Proteins

Identifiers

PMID23713778
PMCPMC4127314

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.