Evidence map›Paper›PMID 23713581›Full record

ArticleJournal of medicinal chemistry2013

A potent and selective small-molecule inhibitor for the lymphoid-specific tyrosine phosphatase (LYP), a target associated with autoimmune diseases.

Yantao He, Sijiu Liu, Ambili Menon, Stephanie Stanford, Emmanuel Oppong, Andrea M Gunawan, Li Wu, Dennis J Wu, Amy M Barrios, Nunzio Bottini and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
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  13. Interrogating Protein Phosphatases with Chemical Activity Probes.Chemistry (Weinheim an der Bergstrasse, Germany) · 2018
    Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Yantao HeDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, 635 Barnhill Drive, Indianapolis, Indiana 46202, USA.
Sijiu Liu
Ambili Menon
Stephanie Stanford
Emmanuel Oppong
Andrea M Gunawan
Li Wu
Dennis J Wu
Amy M Barrios
Nunzio Bottini
Andrew C B Cato
Zhong-Yin Zhang
Indiana University School of MedicineKarlsruhe Institute of Technology · DELa Jolla Institute for Immunology · USIndiana University – Purdue University Indianapolis · USUniversity of Utah · US

Funding

PTPN22 AND AUTOIMMUNITYR01AI070544 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BOTTINI, NUNZIO · 2008 to 2019
$4.0M
Small Molecule Inhibitors for the Oncogenic Protein Tyrosine Phosphatase SHP2R01CA152194 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI ZHANG, ZHONG-YIN · 2010 to 2014
$1.5M
NCI NIH HHS R01 CA152194NCI NIH HHS R01CA152194NIAID NIH HHS R01 AI070544NIAID NIH HHS R01AI070544
6 · The paper itself

Abstract

Lymphoid-specific tyrosine phosphatase (LYP), a member of the protein tyrosine phosphatase (PTP) family of signaling enzymes, is associated with a broad spectrum of autoimmune diseases. Herein we describe our structure-based lead optimization efforts within a 6-hydroxy-benzofuran-5-carboxylic acid series culminating in the identification of compound 8b, a potent and selective inhibitor of LYP with a K(i) value of 110 nM and more than 9-fold selectivity over a large panel of PTPs. The structure of LYP in complex with 8b was obtained by X-ray crystallography, providing detailed information about the molecular recognition of small-molecule ligands binding LYP. Importantly, compound 8b possesses highly efficacious cellular activity in both T- and mast cells and is capable of blocking anaphylaxis in mice. Discovery of 8b establishes a starting point for the development of clinically useful LYP inhibitors for treating a wide range of autoimmune disorders.

Indexed as

Molecular Targeted TherapyAnaphylaxisAnimalsAutoimmune DiseasesCarboxylic AcidsDown-RegulationFemaleHumansJurkat CellsLymphocyte ActivationMast CellsMiceModels, MolecularProtein ConformationProtein Kinase InhibitorsProtein-Tyrosine KinasesCarboxylic AcidsProtein Kinase InhibitorsProtein-Tyrosine KinasesSmall Molecule Libraries

Identifiers

PMID23713581
PMCPMC3711248
OpenAlexW2074086911

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.