Evidence map›Paper›PMID 23712011›Full record

ArticleMolecular systems biology2013

A global S. cerevisiae small ubiquitin-related modifier (SUMO) system interactome.

Tharan Srikumar, Megan C Lewicki, Brian Raught

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Multifaceted roles of SUMO in DNA metabolism.Nucleus (Austin, Tex.) · 2024
    Review
  6. Article
  7. Article
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  11. Article
  12. Review
  13. Review
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  15. Article
  16. Knockout of the Hmt1p Arginine Methyltransferase inMolecular & cellular proteomics : MCP · 2018
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Tharan SrikumarOntario Cancer Institute, University Health Network and Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.
Megan C Lewicki
Brian Raught
Ontario Institute for Cancer Research · CAUniversity Health Network · CA

Funding

Canadian Institutes of Health Research MOP81268
6 · The paper itself

Abstract

The small ubiquitin-related modifier (SUMO) system has been implicated in a number of biological functions, yet the individual components of the SUMO machinery involved in each of these activities were largely unknown. Here we report the first global SUMO system interactome. Using affinity purification coupled with mass spectrometry, we identify >450 protein-protein interactions surrounding the SUMO E2, Siz type E3s and SUMO-specific proteases in budding yeast. Exploiting this information-rich resource, we validate several Siz1- and Siz2-specific substrates, identify a nucleoporin required for proper Ulp1 localization, and uncover important new roles for Ubc9 and Ulp2 in the maintenance of ribosomal DNA.

Indexed as

Gene Expression Regulation, FungalTranscriptomeCell CycleCysteine EndopeptidasesDNA, RibosomalEndopeptidasesNuclear Pore Complex ProteinsProtein Interaction MappingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionSmall Ubiquitin-Related Modifier ProteinsUbiquitinUbiquitin-Conjugating EnzymesUbiquitin-Conjugating Enzyme UBC9Ubiquitin-Protein LigasesCysteine EndopeptidasesDNA, RibosomalEndopeptidasesNuclear Pore Complex ProteinsSaccharomyces cerevisiae ProteinsSiz1 protein, S cerevisiaeSiz2 protein, S cerevisiaeSmall Ubiquitin-Related Modifier ProteinsUbiquitinUbiquitin-Conjugating EnzymesUbiquitin-Conjugating Enzyme UBC9Ubiquitin-Protein LigasesUlp1 proteaseULP2 protein, S cerevisiae

Identifiers

PMID23712011
PMCPMC4039371
OpenAlexW2170310316

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.