Evidence map›Paper›PMID 23712003›Full record

ReviewFree radical biology & medicine2013

Hypoxia: a master regulator of microRNA biogenesis and activity.

Shriram Nallamshetty, Stephen Y Chan, Joseph Loscalzo

Open access · greenAbstract readReview
In one paragraph

Review in Free radical biology & medicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 192 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
192citing papers in PubMed, 1 pooled it
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

192 citing papers in PubMed, 1 synthesis or guideline pooled it, 273 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Dicer-independent miR-451a is upregulated in periodontitis and potentiates inflammation by impairing macrophage polarization and SOCS activity.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
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  8. Empagliflozin modulates microRNA expression in human primary cardiomyocytes under CoClInternational journal of cardiology. Cardiovascular risk and prevention · 2026
    Article
  9. Article
  10. Generation and Characterization of a Genetically ModifiedInternational journal of molecular sciences · 2026
    Article
  11. Review
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  15. Review
  16. Article
  17. Article
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132 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Shriram NallamshettyDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Stephen Y Chan
Joseph Loscalzo
Harvard University · USMassachusetts General Hospital · US

Funding

Tissue AnalysesP01HL048743 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI MICHEL, THOMAS · 1992 to 2014
$26.3M
MULTIDISCIPLINARY RESEARCH TRAINING IN CARDIOLOGYT32HL007208 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI Patrick Thomas Ellinor, David E Sosnovik · 1985 to 2026
$16.1M
Single Molecule Analysis of Sickle Erythrocyte Adhesion in Sickle Cell DiseaseU54HL070819 · NHLBI · BOSTON MEDICAL CENTER · PI LEOPOLD, JANE A · 2003 to 2011
$12.5M
GPx-3 and Peroxide Flux in the Endothelial CellR37HL061795 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LOSCALZO, JOSEPH · 2007 to 2016
$4.3M
The Phathophenotype Landscape of Complex DiseaseU01HL108630 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LOSCALZO, JOSEPH · 2011 to 2014
$2.7M
PLATELET DERIVED REACTIVE OXYGEN SPECIES AND PLAQUER01HL061795 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LOSCALZO, JOSEPH · 1998 to 2006
$1.6M
Targeted Delivery of Progenitor Cells to the LungP50HL107192 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI CHOI, AUGUSTINE M, LOSCALZO, JOSEPH · 2011 to 2012
$1.0M
Functions of the Hypoxia-Induced MicroRNA-210 in Pulmonary Vascular EndotheliumK08HL096834 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI CHAN, STEPHEN Y · 2010 to 2014
$687k
NHLBI NIH HHS 5T32HL007208-34NHLBI NIH HHS HL061795NHLBI NIH HHS HL096843NHLBI NIH HHS HL107192NHLBI NIH HHS HL108630NHLBI NIH HHS HL48743NHLBI NIH HHS HL70819NHLBI NIH HHS K08 HL096834NHLBI NIH HHS P01 HL048743NHLBI NIH HHS P50 HL107192NHLBI NIH HHS R01 HL061795NHLBI NIH HHS R37 HL061795NHLBI NIH HHS T32 HL007208NHLBI NIH HHS U01 HL108630NHLBI NIH HHS U54 HL070819
6 · The paper itself

Abstract

Hypoxia, or low oxygen tension, is a unique environmental stress that induces global changes in a complex regulatory network of transcription factors and signaling proteins to coordinate cellular adaptations in metabolism, proliferation, DNA repair, and apoptosis. Several lines of evidence now establish microRNAs (miRNAs), which are short noncoding RNAs that regulate gene expression through posttranscriptional mechanisms, as key elements in this response to hypoxia. Oxygen deprivation induces a distinct shift in the expression of a specific group of miRNAs, termed hypoxamirs, and emerging evidence indicates that hypoxia regulates several facets of hypoxamir transcription, maturation, and function. Transcription factors such as hypoxia-inducible factor are upregulated under conditions of low oxygen availability and directly activate the transcription of a subset of hypoxamirs. Conversely, hypoxia selectively represses other hypoxamirs through less well characterized mechanisms. In addition, oxygen deprivation has been directly implicated in epigenetic modifications such as DNA demethylation that control specific miRNA transcription. Finally, hypoxia also modulates the activity of key proteins that control posttranscriptional events in the maturation and activity of miRNAs. Collectively, these findings establish hypoxia as an important proximal regulator of miRNA biogenesis and function. It will be important for future studies to address the relative contributions of transcriptional and posttranscriptional events in the regulation of specific hypoxamirs and how such miRNAs are coordinated in order to integrate into the complex hierarchical regulatory network induced by hypoxia.

Indexed as

Gene Expression RegulationAdaptation, PhysiologicalAnimalsApoptosisEpigenesis, GeneticHumansHypoxiaMicroRNAsOxygenSignal TransductionTranscription FactorsTranscription, GeneticMicroRNAsOxygenTranscription Factors3′ untranslated region3′UTRAgo2Argonaute 2CCN5ChIPchromatin immunoprecipitationCUL2cullin2cysteine-rich 61/connective tissue growth factor/nephroblastoma overexpressed 5DGCR8Di George syndrome critical region 8DMNTDNA methyltransferaseE2F3E2F transcription factor 3Free radicalsHIFHREhuman umbilical vein endothelial cellHUVECHypoxamirHypoxiahypoxia-inducible factorhypoxia-responsive elementmammalian target of rapamycinmicroRNAMicroRNAmiRISCmiRNAmiRNA-induced silencing complexmTORNF-κBnuclear factor-κBODDoxygen-dependent domainposttranslational modificationprecursor miRNApre-miRNAprimary microRNApri-miRNAPTMreactive oxygen speciesROSTFTNF receptor-associated factor 6TRAF6transcription factorTWIST1Twist-related protein 1unfolded protein responseUPRVHLvon Hippel-Lindau tumor suppressor protein

Identifiers

PMID23712003
PMCPMC3762925
OpenAlexW2081984783

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.