Evidence map›Paper›PMID 23710762›Full record

ArticleMolecular microbiology2013

Structure of a translocation signal domain mediating conjugative transfer by type IV secretion systems.

Adam Redzej, Aravindan Ilangovan, Silvia Lang, Christian J Gruber, Maya Topf, Klaus Zangger, Ellen L Zechner, Gabriel Waksman

Abstract read
In one paragraph

Article in Molecular microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Translocation of YopJ family effector proteins through the VirB/VirD4 T4SS ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Article
  7. Review
  8. Structural basis for effector recognition by an antibacterial type IV secretion system.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Review
  11. Secrete or perish: The role of secretion systems inComputational and structural biotechnology journal · 2021
    Review
  12. The Impact ofFrontiers in microbiology · 2021
    Review
  13. Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Adam RedzejInstitute of Structural and Molecular Biology, UCL and Birkbeck, Malet Street, London, WC1E 7HX, UK.
Aravindan Ilangovan
Silvia Lang
Christian J Gruber
Maya Topf
Klaus Zangger
Ellen L Zechner
Gabriel Waksman

Funding

Austrian Science Fund FWF P 24016Wellcome TrustWellcome Trust 098302
6 · The paper itself

Abstract

Relaxases are proteins responsible for the transfer of plasmid and chromosomal DNA from one bacterium to another during conjugation. They covalently react with a specific phosphodiester bond within DNA origin of transfer sequences, forming a nucleo-protein complex which is subsequently recruited for transport by a plasmid-encoded type IV secretion system. In previous work we identified the targeting translocation signals presented by the conjugative relaxase TraI of plasmid R1. Here we report the structure of TraI translocation signal TSA. In contrast to known translocation signals we show that TSA is an independent folding unit and thus forms a bona fide structural domain. This domain can be further divided into three subdomains with striking structural homology with helicase subdomains of the SF1B family. We also show that TSA is part of a larger vestigial helicase domain which has lost its helicase activity but not its single-stranded DNA binding capability. Finally, we further delineate the binding site responsible for translocation activity of TSA by targeting single residues for mutations. Overall, this study provides the first evidence that translocation signals can be part of larger structural scaffolds, overlapping with translocation-independent activities.

Indexed as

Bacterial Secretion SystemsConjugation, GeneticCrystallizationDNA HelicasesEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialModels, MolecularPlasmidsProtein Interaction Domains and MotifsProtein Structure, TertiaryBacterial Secretion SystemsDNA HelicasesEscherichia coli ProteinsTraI protein, E coli

Identifiers

PMID23710762
PMCPMC3912908

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.