Evidence map›Paper›PMID 23709667›Full record

ArticlePlant physiology2013

A redox 2-Cys mechanism regulates the catalytic activity of divergent cyclophilins.

Bruna Medéia Campos, Mauricio Luis Sforça, Andre Luis Berteli Ambrosio, Mariane Noronha Domingues, Tatiana de Arruda Campos Brasil de Souza, João Alexandre Ribeiro Gonçalvez Barbosa, Adriana Franco Paes Leme, Carlos Alberto Perez, Sara Britt-Marie Whittaker, Mario Tyago Murakami and 2 more

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Article in Plant physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Bruna Medéia CamposLaboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, SP CP6192, Brazil.
Mauricio Luis Sforça
Andre Luis Berteli Ambrosio
Mariane Noronha Domingues
Tatiana de Arruda Campos Brasil de Souza
João Alexandre Ribeiro Gonçalvez Barbosa
Adriana Franco Paes Leme
Carlos Alberto Perez
Sara Britt-Marie Whittaker
Mario Tyago Murakami
Ana Carolina de Matos Zeri
Celso Eduardo Benedetti
Brazilian Synchrotron Light Laboratory · BRBrazilian Biosciences National Laboratory · BRUniversity of Birmingham · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

The citrus (Citrus sinensis) cyclophilin CsCyp is a target of the Xanthomonas citri transcription activator-like effector PthA, required to elicit cankers on citrus. CsCyp binds the citrus thioredoxin CsTdx and the carboxyl-terminal domain of RNA polymerase II and is a divergent cyclophilin that carries the additional loop KSGKPLH, invariable cysteine (Cys) residues Cys-40 and Cys-168, and the conserved glutamate (Glu) Glu-83. Despite the suggested roles in ATP and metal binding, the functions of these unique structural elements remain unknown. Here, we show that the conserved Cys residues form a disulfide bond that inactivates the enzyme, whereas Glu-83, which belongs to the catalytic loop and is also critical for enzyme activity, is anchored to the divergent loop to maintain the active site open. In addition, we demonstrate that Cys-40 and Cys-168 are required for the interaction with CsTdx and that CsCyp binds the citrus carboxyl-terminal domain of RNA polymerase II YSPSAP repeat. Our data support a model where formation of the Cys-40-Cys-168 disulfide bond induces a conformational change that disrupts the interaction of the divergent and catalytic loops, via Glu-83, causing the active site to close. This suggests a new type of allosteric regulation in divergent cyclophilins, involving disulfide bond formation and a loop-displacement mechanism.

Indexed as

Amino Acid SequenceBinding SitesCatalytic DomainCitrus sinensisConserved SequenceCrystallography, X-RayCyclophilinsCyclosporineCysteineDisulfidesGlutamic AcidModels, MolecularMolecular Sequence DataOxidation-ReductionProtein ConformationRNA Polymerase IICyclophilinsCyclosporineCysteineDisulfidesGlutamic AcidRNA Polymerase IIThioredoxinsZinc

Identifiers

PMID23709667
PMCPMC3707534
OpenAlexW2158055511

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.