Evidence map›Paper›PMID 23709628›Full record

ArticleThe Plant cell2013

Seed architecture shapes embryo metabolism in oilseed rape.

Ljudmilla Borisjuk, Thomas Neuberger, Jörg Schwender, Nicolas Heinzel, Stephanie Sunderhaus, Johannes Fuchs, Jordan O Hay, Henning Tschiersch, Hans-Peter Braun, Peter Denolf and 3 more

Abstract read
In one paragraph

Article in The Plant cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Genome-Wide Identification and Characterization of the UMAMIT Gene Family inInternational journal of molecular sciences · 2026
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  2. Review
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  7. Review
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  11. Article
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  13. Article
  14. An expanded role for the transcription factorFrontiers in plant science · 2022
    Article
  15. Transcriptomic analysis of rapeseed (Frontiers in plant science · 2022
    Article
  16. Breeding Canola (Plants (Basel, Switzerland) · 2021
    Review
  17. Article
  18. Molecular Control of Oil Metabolism in the Endosperm of Seeds.International journal of molecular sciences · 2021
    Review
  19. Article
  20. Adaptation Strategies of Halophytic BarleyInternational journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Ljudmilla BorisjukDepartment of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany.
Thomas Neuberger
Jörg Schwender
Nicolas Heinzel
Stephanie Sunderhaus
Johannes Fuchs
Jordan O Hay
Henning Tschiersch
Hans-Peter Braun
Peter Denolf
Bart Lambert
Peter M Jakob
Hardy Rolletschek

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Constrained to develop within the seed, the plant embryo must adapt its shape and size to fit the space available. Here, we demonstrate how this adjustment shapes metabolism of photosynthetic embryo. Noninvasive NMR-based imaging of the developing oilseed rape (Brassica napus) seed illustrates that, following embryo bending, gradients in lipid concentration became established. These were correlated with the local photosynthetic electron transport rate and the accumulation of storage products. Experimentally induced changes in embryo morphology and/or light supply altered these gradients and were accompanied by alterations in both proteome and metabolome. Tissue-specific metabolic models predicted that the outer cotyledon and hypocotyl/radicle generate the bulk of plastidic reductant/ATP via photosynthesis, while the inner cotyledon, being enclosed by the outer cotyledon, is forced to grow essentially heterotrophically. Under field-relevant high-light conditions, major contribution of the ribulose-1,5-bisphosphate carboxylase/oxygenase-bypass to seed storage metabolism is predicted for the outer cotyledon and the hypocotyl/radicle only. Differences between in vitro- versus in planta-grown embryos suggest that metabolic heterogeneity of embryo is not observable by in vitro approaches. We conclude that in vivo metabolic fluxes are locally regulated and connected to seed architecture, driving the embryo toward an efficient use of available light and space.

Indexed as

PhotosynthesisBrassica napusCotyledonElectron TransportElectrophoresis, Gel, Two-DimensionalLipid MetabolismMagnetic Resonance ImagingMass SpectrometryMetabolomeMetabolomicsModels, AnatomicModels, BiologicalPlant ProteinsProteomeProteomicsRibulosephosphatesPlant ProteinsProteomeribulose-1,5 diphosphateRibulosephosphates

Identifiers

PMID23709628
PMCPMC3694696

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.