Evidence map›Paper›PMID 23709268›Full record

ArticleThe Journal of biological chemistry2013

A model of the membrane-bound cytochrome b5-cytochrome P450 complex from NMR and mutagenesis data.

Shivani Ahuja, Nicole Jahr, Sang-Choul Im, Subramanian Vivekanandan, Nataliya Popovych, Stéphanie V Le Clair, Rui Huang, Ronald Soong, Jiadi Xu, Kazutoshi Yamamoto and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
19.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 117 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. The journal of physical chemistry. B · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. CytochromeFrontiers in plant science · 2022
    Review
  12. CytochromeDrug metabolism and disposition: the biological fate of chemicals · 2021
    Article
  13. Steroidogenic cytochrome P450 17A1 structure and function.Molecular and cellular endocrinology · 2021
    Review
  14. Nanodiscs: A toolkit for membrane protein science.Protein science : a publication of the Protein Society · 2021
    Review
  15. Article
  16. Article
  17. Article
  18. Expression, purification, and functional reconstitution ofBiochimica et biophysica acta. Biomembranes · 2020
    Article
  19. Review
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Shivani AhujaDepartment of Chemistry and Biophysics, University of Michigan, Ann Arbor, Michigan 48109-1055, USA.
Nicole Jahr
Sang-Choul Im
Subramanian Vivekanandan
Nataliya Popovych
Stéphanie V Le Clair
Rui Huang
Ronald Soong
Jiadi Xu
Kazutoshi Yamamoto
Ravi P Nanga
Angela Bridges
Lucy Waskell
Ayyalusamy Ramamoorthy
University of Michigan–Ann Arbor · USVA Center for Clinical Management Research · US

Funding

Supplement: Investigation of Membrane-Bound Cytochromes-P450-b5 InteractionsR01GM084018 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAMAMOORTHY, AYYALUSAMY · 2009 to 2018
$3.8M
PARTICIPATION OF CYTOCHROME B5 IN ANESTHETIC METABOLISMR01GM035533 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WASKELL, LUCY A · 1985 to 2010
$2.7M
Microsomal Cytochromes P450 and their Interactions with their Redox PartnersR01GM094209 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WASKELL, LUCY A · 2011 to 2014
$1.5M
Rapid and efficient production of functional Cytochrome P450 enzymatic complex foR01GM095640 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAMAMOORTHY, AYYALUSAMY · 2010 to 2013
$1.3M
NIGMS NIH HHS GM035533NIGMS NIH HHS GM084018NIGMS NIH HHS GM094209NIGMS NIH HHS GM095640NIGMS NIH HHS R01 GM035533NIGMS NIH HHS R01 GM084018NIGMS NIH HHS R01 GM094209NIGMS NIH HHS R01 GM095640
6 · The paper itself

Abstract

Microsomal cytochrome b5 (cytb5) is a membrane-bound protein that modulates the catalytic activity of its redox partner, cytochrome P4502B4 (cytP450). Here, we report the first structure of full-length rabbit ferric microsomal cytb5 (16 kDa), incorporated in two different membrane mimetics (detergent micelles and lipid bicelles). Differential line broadening of the cytb5 NMR resonances and site-directed mutagenesis data were used to characterize the cytb5 interaction epitope recognized by ferric microsomal cytP450 (56 kDa). Subsequently, a data-driven docking algorithm, HADDOCK (high ambiguity driven biomolecular docking), was used to generate the structure of the complex between cytP4502B4 and cytb5 using experimentally derived restraints from NMR, mutagenesis, and the double mutant cycle data obtained on the full-length proteins. Our docking and experimental results point to the formation of a dynamic electron transfer complex between the acidic convex surface of cytb5 and the concave basic proximal surface of cytP4502B4. The majority of the binding energy for the complex is provided by interactions between residues on the C-helix and β-bulge of cytP450 and residues at the end of helix α4 of cytb5. The structure of the complex allows us to propose an interprotein electron transfer pathway involving the highly conserved Arg-125 on cytP450 serving as a salt bridge between the heme propionates of cytP450 and cytb5. We have also shown that the addition of a substrate to cytP450 likely strengthens the cytb5-cytP450 interaction. This study paves the way to obtaining valuable structural, functional, and dynamic information on membrane-bound complexes.

Indexed as

Models, MolecularAmino Acid SequenceAnimalsArginineBinding SitesBiocatalysisCytochrome P-450 Enzyme SystemCytochromes b5Electron TransportHemeKineticsMagnetic Resonance SpectroscopyMolecular Sequence DataMultiprotein ComplexesMutagenesis, Site-DirectedMutationArginineCytochrome P-450 Enzyme SystemCytochromes b5Hemeheme propionate-7Multiprotein ComplexesCytochrome P450Enzyme CatalysisMembrane ProteinsNMRStructural Biology

Identifiers

PMID23709268
PMCPMC3724662
OpenAlexW2015091165

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.