Evidence map›Paper›PMID 23709223›Full record

ArticleThe Journal of biological chemistry2013

The nucleic acid-binding domain and translational repression activity of a Xenopus terminal uridylyl transferase.

Christopher P Lapointe, Marvin Wickens

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. The role of 3' end uridylation in RNA metabolism and cellular physiology.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  5. RNA uridylation and decay in plants.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  6. Article
  7. Article
  8. Article
  9. The new (dis)order in RNA regulation.Cell communication and signaling : CCS · 2016
    Review
  10. Article
  11. Article
  12. Improved crystallization and diffraction of caffeine-induced death suppressor protein 1 (Cid1).Acta crystallographica. Section F, Structural biology communications · 2015
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Christopher P LapointeIntegrated Program in Biochemistry, University of Wisconsin, Madison, Wisconsin 53706, USA.
Marvin Wickens
University of Wisconsin–Madison · US

Funding

FUNCTION OF POLY(A) AND 3'UTRSR01GM050942 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI WICKENS, MARVIN P. · 1994 to 2020
$8.3M
Cleavage, polyadenylation, and transport of mRNAR37GM031892 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI WICKENS, MARVIN P. · 2003 to 2012
$3.5M
CLEAVAGE, POLYADENYLATION, AND TRANSPORT OF MRNAR01GM031892 · NIGMS · UNIVERSITY OF WISCONSIN MADISON · PI WICKENS, MARVIN P. · 1985 to 2000
$278k
NIGMS NIH HHS GM31892NIGMS NIH HHS GM50942NIGMS NIH HHS R01 GM031892NIGMS NIH HHS R01 GM050942NIGMS NIH HHS R37 GM031892
6 · The paper itself

Abstract

Terminal uridylyl transferases (TUTs) catalyze the addition of uridines to the 3' ends of RNAs and are implicated in the regulation of both messenger RNAs and microRNAs. To better understand how TUTs add uridines to RNAs, we focused on a putative TUT from Xenopus laevis, XTUT7. We determined that XTUT7 catalyzed the addition of uridines to RNAs. Mutational analysis revealed that a truncated XTUT7 enzyme, which contained solely the nucleotidyl transferase and poly(A) polymerase-associated domains, was sufficient for catalytic activity. XTUT7 activity decreased upon removal of the CCHC zinc finger domains and a short segment of basic amino acids (the basic region). This basic region bound nucleic acids in vitro. We also demonstrated that XTUT7 repressed translation of a polyadenylated RNA, to which it added a distinct number of uridines. We generated a predicted structure of the XTUT7 catalytic core that indicated histidine 1269 was likely important for uridine specificity. Indeed, mutation of histidine 1269 broadened the nucleotide specificity of XTUT7 and abolished XTUT7-dependent translational repression. Our data reveal key aspects of how XTUT7 adds uridines to RNAs, highlight the role of the basic region, illustrate that XTUT7 can repress translation, and identify an amino acid important for uridine specificity.

Indexed as

Protein BiosynthesisAmino Acid SequenceAnimalsBase SequenceBinding SitesBlotting, WesternGene Expression RegulationHistidineModels, MolecularMolecular Sequence DataNucleic AcidsNucleotidyltransferasesProtein BindingProtein Structure, TertiaryReverse Transcriptase Polymerase Chain ReactionRNAHistidineNucleic AcidsNucleotidyltransferasesRNARNA NucleotidyltransferasesTUT7 protein, XenopusUridineUTP-RNA uridylyltransferaseXenopus ProteinsEnzyme MutationMolecular BiologyProtein-Nucleic Acid InteractionRNA-binding ProteinRNA UridylationTerminal Uridylyl TransferaseTranslation ControlTUT7XenopusZCCHC6

Identifiers

PMID23709223
PMCPMC3711335
OpenAlexW2091324340

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.