Evidence map›Paper›PMID 23709181›Full record

ArticleEukaryotic cell2013

Frequency and genetic diversity of the MAT1 locus of Histoplasma capsulatum isolates in Mexico and Brazil.

Gabriela Rodríguez-Arellanes, Carolina Nascimento de Sousa, Mauro de Medeiros-Muniz, José A Ramírez, Cláudia V Pizzini, Marcos de Abreu-Almeida, Manoel M Evangelista de Oliveira, Ana-Marisa Fusco-Almeida, Tania Vite-Garín, Nayla S Pitangui and 5 more

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.2field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. The global epidemiology of emergingStudies in mycology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Gabriela Rodríguez-ArellanesDepartamento de Microbiología-Parasitología, Facultad de Medicina, Universidad Nacional Autónoma de México, México DF, Mexico.
Carolina Nascimento de Sousa
Mauro de Medeiros-Muniz
José A Ramírez
Cláudia V Pizzini
Marcos de Abreu-Almeida
Manoel M Evangelista de Oliveira
Ana-Marisa Fusco-Almeida
Tania Vite-Garín
Nayla S Pitangui
Daniel A Estrada-Bárcenas
Antonio E González-González
María José Soares Mendes-Giannini
Rosely M Zancopé-Oliveira
Maria-Lucia Taylor
Universidad Nacional Autónoma de México · MXFundação Oswaldo Cruz · BRUniversidade Estadual Paulista (Unesp) · BRInstituto Evandro Chagas · BRInstituto Politécnico Nacional · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The MAT1-1 and MAT1-2 idiomorphs associated with the MAT1 locus of Histoplasma capsulatum were identified by PCR. A total of 28 fungal isolates, 6 isolates from human clinical samples and 22 isolates from environmental (infected bat and contaminated soil) samples, were studied. Among the 14 isolates from Mexico, 71.4% (95% confidence interval [95% CI], 48.3% to 94.5%) were of the MAT1-2 genotype, whereas 100% of the isolates from Brazil were of the MAT1-1 genotype. Each MAT1 idiomorphic region was sequenced and aligned, using the sequences of the G-217B (+ mating type) and G-186AR (- mating type) strains as references. BLASTn analyses of the MAT1-1 and MAT1-2 sequences studied correlated with their respective + and - mating type genotypes. Trees were generated by the maximum likelihood (ML) method to search for similarity among isolates of each MAT1 idiomorph. All MAT1-1 isolates originated from Brazilian bats formed a well-defined group; three isolates from Mexico, the G-217B strain, and a subgroup encompassing all soil-derived isolates and two clinical isolates from Brazil formed a second group; last, one isolate (EH-696P) from a migratory bat captured in Mexico formed a third group of the MAT1-1 genotype. The MAT1-2 idiomorph formed two groups, one of which included two H. capsulatum isolates from infected bats that were closely related to the G-186AR strain. The other group was formed by two human isolates and six isolates from infected bats. Concatenated ML trees, with internal transcribed spacer 1 (ITS1) -5.8S-ITS2 and MAT1-1 or MAT1-2 sequences, support the relatedness of MAT1-1 or MAT1-2 isolates. H. capsulatum mating types were associated with the geographical origin of the isolates, and all isolates from Brazil correlated with their environmental sources.

Indexed as

Genetic VariationBase SequenceBrazilDNA, IntergenicGenes, Mating Type, FungalGenetic LociHistoplasmaHumansLikelihood FunctionsMexicoMolecular Sequence DataDNA, Intergenic

Identifiers

PMID23709181
PMCPMC3697462
OpenAlexW2171018274

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.