Evidence map›Paper›PMID 23709157›Full record

ArticleDigestive diseases and sciences2013

NOD2 mutations affect muramyl dipeptide stimulation of human B lymphocytes and interact with other IBD-associated genes.

Zhenwu Lin, John P Hegarty, Gerrit John, Arthur Berg, Zhong Wang, Rishabh Sehgal, Danielle M Pastor, Yunhua Wang, Leonard R Harris, Lisa S Poritz and 2 more

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In one paragraph

Article in Digestive diseases and sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. IL-1α and IL-1β promote NOD2-induced immune responses by enhancing MAPK signaling.Laboratory investigation; a journal of technical methods and pathology · 2019
    Article
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Zhenwu LinDivision of Colon and Rectal Surgery, Department of Surgery, Pennsylvania State University College of Medicine, H137, 500 University Drive, Hershey, PA 17033, USA. zlin@hmc.psu.edu
John P Hegarty
Gerrit John
Arthur Berg
Zhong Wang
Rishabh Sehgal
Danielle M Pastor
Yunhua Wang
Leonard R Harris
Lisa S Poritz
Stefan Schreiber
Walter A Koltun
Pennsylvania State University · USKiel University · DEPenn State Milton S. Hershey Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGenetic and functional studies have associated variants in the NOD2/CARD15 gene with Crohn's disease.

aimsThis study aims to replicate the association of three common NOD2 mutations with Crohn's disease, study its effect on NOD2 expression in B cells and its interaction with other IBD-associated genes.

methodsA total of 294 IBD patients (179 familial IBD, 115 sporadic IBD) and 298 unrelated healthy controls were from central Pennsylvania. NOD2 mutations were analyzed by primer-specific amplification, PCR based-RFLP, and validated with the ABI SNPlexM genotyping system. Gene-gene interaction was studied using a statistical model for epistasis analysis.

resultsThree common NOD2 mutations are associated with Crohn's disease (p=5.08×10(-7), 1.67×10(-6), and 1.87×10(-2) for 1007fs, R720W, and G908R, respectively), but not with ulcerative colitis (p=0.1046, 0.1269, and 0.8929, respectively). For IBD overall, 1007finsC (p=4.4×10(-5)) and R720W (p=9.24×10(-5)) were associated with IBD, but not G908R (p=0.1198). We revealed significant interactions of NOD2 with other IBD susceptibility genes IL23R, DLG5, and OCTN1. We discovered that NOD2 was expressed in both normal human peripheral blood B cells and in EBV-transformed B cell lines. Moreover, we further demonstrated that muramyl dipeptide (MDP) stimulation of B lymphocytes up-regulated expression of NF-κB-p50 mRNA.

conclusionNOD2 is expressed in peripheral B cells, and the up-regulation of NOD2 expression by MDP was significantly impaired by NOD2 mutations. The finding suggests a possible role of NOD2 in the immunological response in IBD pathogenesis.

Indexed as

Acetylmuramyl-Alanyl-IsoglutamineB-LymphocytesCase-Control StudiesEpistasis, GeneticHumansInflammatory Bowel DiseasesMembrane ProteinsMutationNF-kappa B p50 SubunitNod2 Signaling Adaptor ProteinOrganic Cation Transport ProteinsReceptors, InterleukinSymportersTumor Suppressor ProteinsUp-RegulationAcetylmuramyl-Alanyl-IsoglutamineDLG5 protein, humanIL23R protein, humanMembrane ProteinsNF-kappa B p50 SubunitNFKB1 protein, humanNOD2 protein, humanNod2 Signaling Adaptor ProteinOrganic Cation Transport ProteinsReceptors, InterleukinSLC22A4 protein, humanSymportersTumor Suppressor Proteins

Identifiers

PMID23709157
OpenAlexW2076207927

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.