Evidence map›Paper›PMID 23708998›Full record

ArticleNature2013

The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis.

Elena Rivkin, Stephanie M Almeida, Derek F Ceccarelli, Yu-Chi Juang, Teresa A MacLean, Tharan Srikumar, Hao Huang, Wade H Dunham, Ryutaro Fukumura, Gang Xie and 5 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 182 papers.

0numbers the graph read from it
0cells of the map it votes in
182citing papers in PubMed
10.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

182 citing papers in PubMed, 282 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Deubiquitinase OTULIN dampens RIG-I-dependent antiviral signaling by removing linear ubiquitination from TRAF6.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Article
  9. Linear ubiquitination of the NMDA receptor GluN2A subunit facilitates the GluN2B-to-GluN2A switch and synaptic maturation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  10. Article
  11. Review
  12. Monogenic disorders of the TNF signalling pathway.Nature reviews. Rheumatology · 2026
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

122 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Elena RivkinSamuel Lunenfeld Research Institute, Mt Sinai Hospital, 600 University Avenue, Toronto, Ontario M5G 1X5, Canada.
Stephanie M Almeida
Derek F Ceccarelli
Yu-Chi Juang
Teresa A MacLean
Tharan Srikumar
Hao Huang
Wade H Dunham
Ryutaro Fukumura
Gang Xie
Yoichi Gondo
Brian Raught
Anne-Claude Gingras
Frank Sicheri
Sabine P Cordes
Mount Sinai Hospital · CALunenfeld-Tanenbaum Research Institute · CAUniversity of Toronto · CARIKEN BioResource Research Center · JP

Funding

CIHR 119289-1CIHR IHO 94384CIHR MOP 111199CIHR MOP119289CIHR MOP 97966
6 · The paper itself

Abstract

A complex interaction of signalling events, including the Wnt pathway, regulates sprouting of blood vessels from pre-existing vasculature during angiogenesis. Here we show that two distinct mutations in the (uro)chordate-specific gumby (also called Fam105b) gene cause an embryonic angiogenic phenotype in gumby mice. Gumby interacts with disheveled 2 (DVL2), is expressed in canonical Wnt-responsive endothelial cells and encodes an ovarian tumour domain class of deubiquitinase that specifically cleaves linear ubiquitin linkages. A crystal structure of gumby in complex with linear diubiquitin reveals how the identified mutations adversely affect substrate binding and catalytic function in line with the severity of their angiogenic phenotypes. Gumby interacts with HOIP (also called RNF31), a key component of the linear ubiquitin assembly complex, and decreases linear ubiquitination and activation of NF-κB-dependent transcription. This work provides support for the biological importance of linear (de)ubiquitination in angiogenesis, craniofacial and neural development and in modulating Wnt signalling.

Indexed as

Neovascularization, PhysiologicUbiquitinationAdaptor Proteins, Signal TransducingAllelesAmino Acid SequenceAnimalsBase SequenceCrystallography, X-RayDishevelled ProteinsEmbryo, MammalianEndopeptidasesFemaleGene Expression ProfilingHEK293 CellsHumansMiceAdaptor Proteins, Signal TransducingDishevelled ProteinsDVL2 protein, humanDvl2 protein, mouseEndopeptidasesgumby protein, mouseOTULIN protein, humanPhosphoproteinsUbiquitinUbiquitin-Protein Ligases

Identifiers

PMID23708998
PMCPMC4931916
OpenAlexW2046073277

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.