Evidence map›Paper›PMID 23708364›Full record

ArticleBiophysical journal2013

Calcium causes a conformational change in lamin A tail domain that promotes farnesyl-mediated membrane association.

Agnieszka Kalinowski, Zhao Qin, Kelli Coffey, Ravi Kodali, Markus J Buehler, Mathias Lösche, Kris Noel Dahl

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Nuclear stiffening inhibits migration of invasive melanoma cells.Cellular and molecular bioengineering · 2014
    Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Agnieszka KalinowskiBiomedical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.
Zhao Qin
Kelli Coffey
Ravi Kodali
Markus J Buehler
Mathias Lösche
Kris Noel Dahl
Carnegie Mellon University · USMassachusetts Institute of Technology · USNIST Center for Neutron Research · USUniversity of Pittsburgh · US

Funding

Membrane Coupling and Dynamic Reorganization of Gag in Viral BuddingR01GM101647 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI LOESCHE, MATHIAS · 2012 to 2015
$1.2M
Molecular determinants of lamin a accumulation in human aging and diseaseF30AG030905 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KALINOWSKI, AGNIESZKA · 2009 to 2012
$185k
NIA NIH HHS F30 AG030905NIA NIH HHS F30-AG030905NIGMS NIH HHS 1R01-GM101647NIGMS NIH HHS R01 GM101647
6 · The paper itself

Abstract

Lamin proteins contribute to nuclear structure and function, primarily at the inner nuclear membrane. The posttranslational processing pathway of lamin A includes farnesylation of the C-terminus, likely to increase membrane association, and subsequent proteolytic cleavage of the C-terminus. Hutchinson Gilford progeria syndrome is a premature aging disorder wherein a mutant version of lamin A, Δ50 lamin A, retains its farnesylation. We report here that membrane association of farnesylated Δ50 lamin A tail domains requires calcium. Experimental evidence and molecular dynamics simulations collectively suggest that the farnesyl group is sequestered within a hydrophobic region in the tail domain in the absence of calcium. Calcium binds to the tail domain with an affinity KD ≈ 250 μM where it alters the structure of the Ig-fold and increases the solvent accessibility of the C-terminus. In 2 mM CaCl2, the affinity of the farnesylated protein to a synthetic membrane is KD ≈ 2 μM, as measured with surface plasmon resonance, but showed a combination of aggregation and binding. Membrane binding in the absence of calcium could not be detected. We suggest that a conformational change induced in Δ50 lamin A with divalent cations plays a regulatory role in the posttranslational processing of lamin A, which may be important in disease pathogenesis.

Indexed as

Amino Acid SequenceAnimalsCalciumCell MembraneHumansLamin Type ALipid BilayersMolecular Dynamics SimulationMolecular Sequence DataProtein BindingProtein PrenylationProtein Structure, TertiaryCalciumLamin Type ALipid Bilayers

Identifiers

PMID23708364
PMCPMC3660631
OpenAlexW2055580424

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.