Evidence map›Paper›PMID 23707720›Full record

ArticleBiochemical and biophysical research communications2013

Identification of ubiquitin-modified lysine residues and novel phosphorylation sites on eukaryotic initiation factor 2B epsilon.

Alexander P Tuckow, Abid A Kazi, Scot R Kimball, Leonard S Jefferson

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Covalent inhibition ofiScience · 2025
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alexander P TuckowDepartment of Cellular and Molecular Physiology, The Pennsylvania State University College of Medicine, Hershey, PA 17033, USA.
Abid A Kazi
Scot R Kimball
Leonard S Jefferson
Pennsylvania State University · US

Funding

REGULATION OF LIVER GROWTH AND FUNCTIONR01DK013499 · NIDDK · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI KIMBALL, SCOT R · 1995 to 2018
$8.0M
REGULATION OF SKELETAL MUSCLE METABOLISMR01DK015658 · NIDDK · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI KIMBALL, SCOT R · 1986 to 2021
$7.4M
REGULATION OF LIVER GROWTH AND FUNCTIONR37DK013499 · NIDDK · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI JEFFERSON, LEONARD S · 1986 to 1993
–
NIDDK NIH HHS DK-13499NIDDK NIH HHS DK-15658NIDDK NIH HHS R01 DK013499NIDDK NIH HHS R01 DK015658
6 · The paper itself

Abstract

Eukaryotic initiation factor 2Bε (eIF2Bε) plays a critical role in the initiation of mRNA translation and its expression and guanine nucleotide exchange activity are major determinants of the rate of protein synthesis. In this work we provide evidence that the catalytic epsilon subunit of eIF2B is subject to ubiquitination and proteasome-mediated degradation. Lysates of C2C12 myoblasts treated with proteasome inhibitor were subjected to sequential immunoprecipitations for eIF2Bε followed by ubiquitin. Tandem mass spectrometry (LC-MS/MS) analysis of immunoprecipitated proteins resulted in the identification of five peptides containing ubiquitin (diglycine) modifications on eIF2Bε. The specific lysine residues containing the ubiquitin modifications were localized as Lys-56, Lys-98, Lys-136, Lys-212 and Lys-500 (corresponding to the rat protein sequence). In addition three novel phosphorylation sites were identified including Ser-22, Ser-125, and Thr-317. Moreover, peptides corresponding to the amino acid sequence of the E3 ligase NEDD4 were also detected in the LC-MS/MS analysis, and an interaction between endogenous eIF2Bε with NEDD4 was confirmed by co-immunoprecipitation.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCatalysisCell LineEndosomal Sorting Complexes Required for TransportEpitopesEukaryotic Initiation Factor-2BHumansLysineMiceMolecular Sequence DataNedd4 Ubiquitin Protein LigasesPhosphorylationProteasome Endopeptidase ComplexProtein BindingEndosomal Sorting Complexes Required for TransportEpitopesEukaryotic Initiation Factor-2BLysineNedd4l protein, mouseNEDD4L protein, ratNedd4 protein, humanNedd4 protein, ratNedd4 Ubiquitin Protein LigasesProteasome Endopeptidase ComplexSerineThreonineUbiquitinUbiquitin-Protein Ligases

Identifiers

PMID23707720
PMCPMC3744827
OpenAlexW2034222321

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.