Evidence map›Paper›PMID 23707062›Full record

ArticleCell reports2013

H/ACA small RNA dysfunctions in disease reveal key roles for noncoding RNA modifications in hematopoietic stem cell differentiation.

Cristian Bellodi, Mary McMahon, Adrian Contreras, Dayle Juliano, Noam Kopmar, Tomoka Nakamura, David Maltby, Alma Burlingame, Sharon A Savage, Akiko Shimamura and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed, 1 pooled it
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 1 synthesis or guideline pooled it, 150 citations in OpenAlex.

  1. What is the Role of SNORA42 in Carcinogenesis? A Systematic Review.Asian Pacific journal of cancer prevention : APJCP · 2023
    Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Interprotomer communication and functional asymmetry in H/ACA snoRNPs.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Ribosomes: from conserved origin to functional/medical mobility and heterogeneity.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  13. The zebrafish (NAR genomics and bioinformatics · 2025
    Article
  14. Article
  15. Article
  16. Review
  17. NewmedRxiv : the preprint server for health sciences · 2024
    Article
  18. Article
  19. SnoRNAs: Exploring Their Implication in Human Diseases.International journal of molecular sciences · 2024
    Review
  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Cristian BellodiSchool of Medicine and Department of Urology, UCSF Helen Diller Comprehensive Cancer Center, San Francisco, CA 94115, USA.
Mary McMahon
Adrian Contreras
Dayle Juliano
Noam Kopmar
Tomoka Nakamura
David Maltby
Alma Burlingame
Sharon A Savage
Akiko Shimamura
Davide Ruggero
UCSF Helen Diller Family Comprehensive Cancer Center · USUniversity of California, San Francisco · USCancer Research Center · USDivision of Cancer Epidemiology and GeneticsUniversity of Washington · US

Funding

Genetic Epidemiology of Telomere Maintenance and Cancer EtiologyZIACP010190 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI SAVAGE, SHARON A. · 2009 to 2025
$10.2M
Bio-Organic Biomedical Mass Spectromy ResourceP41GM103481 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURLINGAME, ALMA L · 2012 to 2015
$6.4M
Role of rRNA Modifications in Dyskeratosis Congenita and Translation ControlR01HL085572 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RUGGERO, DAVIDE · 2006 to 2009
$1.8M
Role of ribosome impairments in X-linked Dyskeratosis Congenita pathogenesisR01DK098057 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RUGGERO, DAVIDE · 2012 to 2015
$1.2M
Howard Hughes Medical InstituteIntramural NIH HHSNHLBI NIH HHS 3R01HL085572-05S1NHLBI NIH HHS R01 HL085572NHLBI NIH HHS R01HL085572NIDDK NIH HHS R01 DK098057NIDDK NIH HHS R01DK098057NIGMS NIH HHS 8P41GM103481NIGMS NIH HHS P41 GM103481
6 · The paper itself

Abstract

Noncoding RNAs control critical cellular processes, although their contribution to disease remains largely unexplored. Dyskerin associates with hundreds of H/ACA small RNAs to generate a multitude of functionally distinct ribonucleoproteins (RNPs). The DKC1 gene, encoding dyskerin, is mutated in the multisystem disorder X-linked dyskeratosis congenita (X-DC). A central question is whether DKC1 mutations affect the stability of H/ACA RNPs, including those modifying ribosomal RNA (rRNA). We carried out comprehensive profiling of dyskerin-associated H/ACA RNPs, revealing remarkable heterogeneity in the expression and function of subsets of H/ACA small RNAs in X-DC patient cells. Using a mass spectrometry approach, we uncovered single-nucleotide perturbations in dyskerin-guided rRNA modifications, providing functional readouts of small RNA dysfunction in X-DC. In addition, we identified that, strikingly, the catalytic activity of dyskerin is required for accurate hematopoietic stem cell differentiation. Altogether, these findings reveal that small noncoding RNA dysfunctions may contribute to the pleiotropic manifestation of human disease.

Indexed as

Cell Cycle ProteinsCell DifferentiationDyskeratosis CongenitaHematopoietic Stem CellsHumansMutationNuclear ProteinsRibonucleoproteins, Small NucleolarRNA, RibosomalRNA, UntranslatedCell Cycle ProteinsDKC1 protein, humanGAR1 protein, humanNuclear ProteinsRibonucleoproteins, Small NucleolarRNA, RibosomalRNA, Untranslated

Identifiers

PMID23707062
PMCPMC3857015
OpenAlexW2151785931

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.