Evidence map›Paper›PMID 23703729›Full record

ArticleHepatology (Baltimore, Md.)2013

Epigenetic regulation of MicroRNA-122 by peroxisome proliferator activated receptor-gamma and hepatitis b virus X protein in hepatocellular carcinoma cells.

Kyoungsub Song, Chang Han, Jinqiang Zhang, Dongdong Lu, Srikanta Dash, Mark Feitelson, Kyu Lim, Tong Wu

Open access · bronzeAbstract read
In one paragraph

Article in Hepatology (Baltimore, Md.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 131 citations in OpenAlex.

  1. MicroRNA-122 as a regulator and biomarker of liver disease.Journal of molecular medicine (Berlin, Germany) · 2026
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  18. Non-coding RNA crosstalk with nuclear receptors in liver disease.Biochimica et biophysica acta. Molecular basis of disease · 2021
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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Kyoungsub SongDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine, New Orleans, LA.
Chang Han
Jinqiang Zhang
Dongdong Lu
Srikanta Dash
Mark Feitelson
Kyu Lim
Tong Wu
Tulane University · USChungnam National University · KRTemple University · US

Funding

cPLA2, COX-2 and PPAR-gamma in CholangiocarcinomaR01CA102325 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI WU, TONG · 2005 to 2020
$3.8M
Hepatitis C Virus and Hepatocellular CarcinomaR01CA089121 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI DASH, SRIKANTA · 2001 to 2016
$2.7M
Prostaglandin Signaling Pathway in Liver CancerR01CA106280 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI WU, TONG · 2005 to 2013
$2.1M
Omega-3 Fatty Acids and Hepatic CarcinogenesisR01CA134568 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI WU, TONG · 2009 to 2013
$1.5M
IL-28B genotype and HCV treatment clearanceR01AI103106 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI DASH, SRIKANTA · 2013 to 2016
$1.5M
cPLA2alpha, COX-2 and TGF-beta in Liver CancerR01DK077776 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI WU, TONG · 2008 to 2011
$1.3M
TGF-beta, MALAT1 and 15-PGDH in Liver CancerR56DK077776 · NIDDK · TULANE UNIVERSITY OF LOUISIANA · PI WU, TONG · 2015 to 2015
$226k
NCI NIH HHS CA102325NCI NIH HHS CA106280NCI NIH HHS CA134568NCI NIH HHS R01 CA089121NCI NIH HHS R01 CA102325NCI NIH HHS R01 CA106280NCI NIH HHS R01 CA134568NIAID NIH HHS R01 AI103106NIDDK NIH HHS DK077776NIDDK NIH HHS R01 DK077776NIDDK NIH HHS R56 DK077776
6 · The paper itself

Abstract

unlabelledMicroRNA-122 (miR-122), a pivotal liver-specific miRNA, has been implicated in several liver diseases including hepatocellular carcinoma (HCC) and hepatitis C and B viral infection. This study aimed to explore epigenetic regulation of miR-122 in human HCC cells and to examine the effect of hepatitis C virus (HCV) and hepatitis B virus (HBV). We performed microRNA microarray analysis and identified miR-122 as the most up-regulated miRNA (6-fold) in human HCC cells treated with 5'aza-2'deoxycytidine (5-Aza-CdR, DNA methylation inhibitor) and 4-phenylbutyric acid (PBA, histone deacetylation inhibitor). Real-time polymerase chain reaction (PCR) analysis verified significant up-regulation of miR-122 by 5'aza and PBA in HCC cells, and to a lesser extent in primary hepatocytes. Peroxisome proliferator activated receptor-gamma (PPARγ) and retinoid X receptor alpha (RXRα) complex was found to be associated with the DR1 and DR2 consensus site in the miR-122 gene promoter which enhanced miR-122 gene transcription. 5-Aza-CdR and PBA treatment increased the association of PPARγ/RXRα, but decreased the association of its corepressors (N-CoR and SMRT), with the miR-122 DR1 and DR2 motifs. The aforementioned DNA-protein complex also contains SUV39H1, an H3K9 histone methyl transferase, which down-regulates miR-122 expression.

conclusionsThese findings establish a novel role of the PPARγ binding complex for epigenetic regulation of miR-122 in human HCC cells. Moreover, we show that hepatitis B virus X protein binds PPARγ and inhibits the transcription of miR-122, whereas hepatitis C viral particles exhibited no significant effect; these findings provide mechanistic insight into reduction of miR-122 in patients with HBV but not with HCV infection.

Indexed as

Epigenesis, GeneticAzacitidineCarcinoma, HepatocellularDecitabineHepatitis CHep G2 CellsHumansLiver NeoplasmsMethyltransferasesMicroRNAsPhenylbutyratesPPAR gammaPromoter Regions, GeneticRepressor ProteinsTrans-ActivatorsViral Regulatory and Accessory Proteins4-phenylbutyric acidAzacitidineDecitabinehepatitis B virus X proteinMethyltransferasesMicroRNAsMIRN122 microRNA, humanPhenylbutyratesPPAR gammaRepressor ProteinsSUV39H1 protein, humanTrans-ActivatorsViral Regulatory and Accessory Proteins

Identifiers

PMID23703729
PMCPMC3773012
OpenAlexW2075919197

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.