ArticleNucleic acids research2013
PubTator: a web-based text mining tool for assisting biocuration.
Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 277 papers, 2 of them syntheses that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
277 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- Knowledge-Driven Mechanistic Enrichment of the Preeclampsia Ignorome.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2023Pooled it
- Pooled it
- Trial
- Systems biology-based drug repurposing for neuroinflammation treatment in activated human microglia.Scientific reports · 2026Article
- Systematic mapping of O-GlcNAc transferase and O-GlcNAcase defines disease-associated variants.The Journal of biological chemistry · 2026Article
- Ontology-driven association rule mining for biomedical entity relationships: integrating hierarchical knowledge to improve gene-disease discovery.Scientific reports · 2026Article
- The NIAID Discovery Portal: a unified search engine for infectious and immune-mediated disease datasets.mSystems · 2026Article
- Secondhand Smoke Exposure Timing Triggers Distinct Placental Responses in Mouse Pregnancy.Cells · 2025Article
- Graph retrieval augmented large language models for facial phenotype associated rare genetic disease.NPJ digital medicine · 2025Article
- Predicting drug-gene relations via analogy tasks with word embeddings.Scientific reports · 2025Article
- An explainable dataset linking facial phenotypes and genes to rare genetic diseases.Scientific data · 2025Article
- LipidFun: a database of lipid functions.Bioinformatics (Oxford, England) · 2025Article
- Assessing the performance of generative artificial intelligence in retrieving information against manually curated genetic and genomic data.Database : the journal of biological databases and curation · 2025Article
- Predicting implicit concept embeddings for singular relationship discovery replication of closed literature-based discovery.Frontiers in research metrics and analytics · 2025Article
- dbGVOSCC: a comprehensive database of genetic variation for systems genetics research on oral squamous cell carcinoma.Frontiers in oncology · 2025Article
- Knowledge graph and its application in the study of neurological and mental disorders.Frontiers in psychiatry · 2025Review
- Empowering entity synonym set generation using flexible perceptual field and multi-layer contextual information.PloS one · 2025Article
- Comprehensive computational analysis via Adverse Outcome Pathways and Aggregate Exposure Pathways in exploring synergistic effects from radon and tobacco smoke on lung cancer.Frontiers in public health · 2025Article
- DALK: Dynamic Co-Augmentation of LLMs and KG to answer Alzheimer's Disease Questions with Scientific Literature.Findings of ACL. EMNLP. Conference on Empirical Methods in Natural Language Processing · 2024Article
- PungentDB: Bridging traditional Chinese medicine of medicine food homology and modern food flavor chemistry.Food chemistry: X · 2024Article
217 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
Manually curating knowledge from biomedical literature into structured databases is highly expensive and time-consuming, making it difficult to keep pace with the rapid growth of the literature. There is therefore a pressing need to assist biocuration with automated text mining tools. Here, we describe PubTator, a web-based system for assisting biocuration. PubTator is different from the few existing tools by featuring a PubMed-like interface, which many biocurators find familiar, and being equipped with multiple challenge-winning text mining algorithms to ensure the quality of its automatic results. Through a formal evaluation with two external user groups, PubTator was shown to be capable of improving both the efficiency and accuracy of manual curation. PubTator is publicly available at http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator/.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.