Evidence map›Paper›PMID 23701594›Full record

ArticleACS chemical neuroscience2013

Intrinsic structural heterogeneity and long-term maturation of amyloid β peptide fibrils.

Jianqiang Ma, Hiroaki Komatsu, Yung Sam Kim, Liu Liu, Robin M Hochstrasser, Paul H Axelsen

Open access · greenAbstract read
In one paragraph

Article in ACS chemical neuroscience, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

  1. From Disordered to Ordered: Nanoscale Spectroscopy Reveals Structural Evolution of Amyloid Beta 40 Fibrils.Chemphyschem : a European journal of chemical physics and physical chemistry · 2026
    Article
  2. Review
  3. Article
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  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
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  14. Site-specific infrared probes of proteins.Annual review of physical chemistry · 2015
    Review
  15. Review
  16. Article
  17. Transient dynamics of Aβ contribute to toxicity in Alzheimer's disease.Cellular and molecular life sciences : CMLS · 2014
    Review
  18. Microscopic insights into the protein-stabilizing effect of trimethylamine N-oxide (TMAO).Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Jianqiang MaUltrafast Optical Processes Laboratory, Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States.
Hiroaki Komatsu
Yung Sam Kim
Liu Liu
Robin M Hochstrasser
Paul H Axelsen
University of Pennsylvania · USUlsan National Institute of Science and Technology · KRUniversity of Michigan–Ann Arbor · US

Funding

ULTRAFAST OPTICAL PROCESSES LABORATORYP41GM104605 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GAI, FENG · 2012 to 2017
$5.6M
Ultrafast Processing in Proteins and Other AssembliesR01GM012592 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GAI, FENG · 1985 to 2013
$3.5M
Structure determination by vibrational spectroscopyR01GM076201 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI AXELSEN, PAUL H · 2007 to 2018
$3.2M
ULTRAFAST PROCESSES IN PROTEINS AND OTHER ASSEMBLIESR37GM012592 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI HOCHSTRASSER, ROBIN MAIN · 1992 to 2001
$493k
NIGMS NIH HHS GM 12592NIGMS NIH HHS GM76201NIGMS NIH HHS P41 GM104605
6 · The paper itself

Abstract

Amyloid β peptides form fibrils that are commonly assumed to have a dry, homogeneous, and static internal structure. To examine these assumptions, fibrils under various conditions and different ages have been examined with multidimensional infrared spectroscopy. Each peptide in the fibril had a ¹³C═¹⁸O label in the backbone of one residue to disinguish the amide I' absorption due to that residue from the amide I' absorption of other residues. Fibrils examined soon after they formed, and reexamined after 1 year in the dry state, exhibited spectral changes confirming that structurally significant water molecules were present in the freshly formed fibrils. Results from fibrils incubated in solution for 4 years indicate that water molecules remained trapped within fibrils and mobile over the 4 year time span. These water molecules are structurally significant because they perturb the parallel β-sheet hydrogen bonding pattern at frequent intervals and at multiple points within individual fibrils, creating structural heterogeneity along the length of a fibril. These results show that the interface between β-sheets in an amyloid fibril is not a "dry zipper", and that the internal structure of a fibril evolves while it remains in a fibrillar state. These features, water trapping, structural heterogeneity, and structural evolution within a fibril over time, must be accommodated in models of amyloid fibril structure and formation.

Indexed as

AmidesAmyloid beta-PeptidesHumansSpectrophotometry, InfraredTime FactorsWaterAmidesAmyloid beta-PeptidesWater

Identifiers

PMID23701594
PMCPMC3750686
OpenAlexW2163877781

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.