Evidence map›Paper›PMID 23701445›Full record

ArticleJournal of the American Chemical Society2013

Coupling protein engineering with probe design to inhibit and image matrix metalloproteinases with controlled specificity.

Montse Morell, Thinh Nguyen Duc, Amanda L Willis, Salahuddin Syed, Jiyoun Lee, Edgar Deu, Yang Deng, Junpeng Xiao, Benjamin E Turk, Jason R Jessen and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Engineering to find function.Nature methods · 2013
    Article
  10. Moving targets: Emerging roles for MMPs in cancer progression and metastasis.Matrix biology : journal of the International Society for Matrix Biology
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Montse MorellDepartment of Pathology, Stanford University School of Medicine, Stanford, California 94305, USA.
Thinh Nguyen Duc
Amanda L Willis
Salahuddin Syed
Jiyoun Lee
Edgar Deu
Yang Deng
Junpeng Xiao
Benjamin E Turk
Jason R Jessen
Stephen J Weiss
Matthew Bogyo
Stanford University · USUniversity of Michigan–Ann Arbor · USYale University · USVanderbilt University Medical Center · US

Funding

Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Mehboob A Hussain · 2013 to 2026
$24.3M
METALLOPROTEASE DEPENDENT FIBRINOLYSIS AND ANGIOGENESISR01CA088308 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WEISS, STEPHEN J · 2000 to 2015
$4.6M
Small Molecule Imaging of Protease ActivityR01EB005011 · NIBIB · STANFORD UNIVERSITY · PI BOGYO, MATTHEW · 2005 to 2013
$3.0M
Development of small molecule probes of matrix metallo protease functionR21EB012311 · NIBIB · STANFORD UNIVERSITY · PI BOGYO, MATTHEW · 2010 to 2010
$240k
NCI NIH HHS R01 CA088308NIBIB NIH HHS R01 EB005011NIBIB NIH HHS R01-EB005011NIBIB NIH HHS R21 EB012311NIBIB NIH HHS R21-EB012311NIDDK NIH HHS P30 DK020572
6 · The paper itself

Abstract

Matrix metalloproteinases (MMPs) are zinc endopeptidases that play roles in numerous pathophysiological processes and therefore are promising drug targets. However, the large size of this family and a lack of highly selective compounds that can be used for imaging or inhibition of specific MMPs members has limited efforts to better define their biological function. Here we describe a protein engineering strategy coupled with small-molecule probe design to selectively target individual members of the MMP family. Specifically, we introduce a cysteine residue near the active-site of a selected protease that does not alter its overall activity or function but allows direct covalent modification by a small-molecule probe containing a reactive electrophile. This specific engineered interaction between the probe and the target protease provides a means to both image and inhibit the modified protease with absolute specificity. Here we demonstrate the feasibility of the approach for two distinct MMP proteases, MMP-12 and MT1-MMP (or MMP-14).

Indexed as

Molecular Probe TechniquesAmino Acid SequenceAnimalsCell LineCysteineHumansMatrix Metalloproteinase 1Matrix Metalloproteinase 12MiceModels, MolecularMolecular Sequence DataOptical ImagingProtein EngineeringSequence AlignmentZebrafishCysteineMatrix Metalloproteinase 1Matrix Metalloproteinase 12

Identifiers

PMID23701445
PMCPMC3722588
OpenAlexW2091780926

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.