Evidence map›Paper›PMID 23700351›Full record

ArticlePlant physiology2013

Functional implication of β-carotene hydroxylases in soybean nodulation.

Yun-Kyoung Kim, Sunghan Kim, Ji-Hyun Um, Kyunga Kim, Sun-Kang Choi, Byung-Hun Um, Suk-Woo Kang, Jee-Woong Kim, Shinichi Takaichi, Seok-Bo Song and 10 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Frontiers in plant science · 2020
    Article
  7. Review
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  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 3 countries.

Yun-Kyoung KimDepartment of Biological Science , Sookmyung Women's University, Seoul 140-742, Korea.
Sunghan Kim
Ji-Hyun Um
Kyunga Kim
Sun-Kang Choi
Byung-Hun Um
Suk-Woo Kang
Jee-Woong Kim
Shinichi Takaichi
Seok-Bo Song
Choon-Hwan Lee
Ho-Seung Kim
Ki Woo Kim
Kyoung Hee Nam
Suk-Ha Lee
Yul-Ho Kim
Hyang-Mi Park
Sun-Hwa Ha
Desh Pal S Verma
Choong-Ill Cheon
Sookmyung Women's University · KRNational Institute of Agricultural Science and Technology · KRPusan National University · KRSeoul National University · KRKyung Hee University · KRKyungpook National University · KRNippon Medical School · JPThe Ohio State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Legume-Rhizobium spp. symbiosis requires signaling between the symbiotic partners and differential expression of plant genes during nodule development. Previously, we cloned a gene encoding a putative β-carotene hydroxylase (GmBCH1) from soybean (Glycine max) whose expression increased during nodulation with Bradyrhizobium japonicum. In this work, we extended our study to three GmBCHs to examine their possible role(s) in nodule development, as they were additionally identified as nodule specific, along with the completion of the soybean genome. In situ hybridization revealed the expression of three GmBCHs (GmBCH1, GmBCH2, and GmBCH3) in the infected cells of root nodules, and their enzymatic activities were confirmed by functional assays in Escherichia coli. Localization of GmBCHs by transfecting Arabidopsis (Arabidopsis thaliana) protoplasts with green fluorescent protein fusions and by electron microscopic immunogold detection in soybean nodules indicated that GmBCH2 and GmBCH3 were present in plastids, while GmBCH1 appeared to be cytosolic. RNA interference of the GmBCHs severely impaired nitrogen fixation as well as nodule development. Surprisingly, we failed to detect zeaxanthin, a product of GmBCH, or any other carotenoids in nodules. Therefore, we examined the possibility that most of the carotenoids in nodules are converted or cleaved to other compounds. We detected the expression of some carotenoid cleavage dioxygenases (GmCCDs) in wild-type nodules and also a reduced amount of zeaxanthin in GmCCD8-expressing E. coli, suggesting cleavage of the carotenoid. In view of these findings, we propose that carotenoids such as zeaxanthin synthesized in root nodules are cleaved by GmCCDs, and we discuss the possible roles of the carotenoid cleavage products in nodulation.

Indexed as

ArabidopsisCytosolDioxygenasesEscherichia coliGene Expression Regulation, PlantGlycine maxMixed Function OxygenasesNitrogen FixationOxidoreductasesPlant ProteinsPlants, Genetically ModifiedPlastidsProtoplastsRNA InterferenceRoot Nodules, PlantXanthophyllsbeta-carotene hydroxylaseDioxygenasesMixed Function OxygenasesOxidoreductasesPlant ProteinsXanthophyllszeaxanthin epoxidaseZeaxanthins

Identifiers

PMID23700351
PMCPMC3707551
OpenAlexW1987901517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.