Evidence map›Paper›PMID 23699412›Full record

ArticleGenes & development2013

Comparative genomics in Chlamydomonas and Plasmodium identifies an ancient nuclear envelope protein family essential for sexual reproduction in protists, fungi, plants, and vertebrates.

Jue Ning, Thomas D Otto, Claudia Pfander, Frank Schwach, Mathieu Brochet, Ellen Bushell, David Goulding, Mandy Sanders, Paul A Lefebvre, Jimin Pei and 4 more

Open access · diamondAbstract readComparative Study
In one paragraph

Article in Genes & development, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
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  6. Guanine storage vacuoles sequester guanine crystals and serve as nitrogen reserves inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Nuclear Fusion in Yeast and Plant Reproduction.Plants (Basel, Switzerland) · 2023
    Article
  9. Differentiation ofProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Article
  11. DMP8 and 9 regulate HAP2/GCS1 trafficking for the timely acquisition of sperm fusion competence.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. Review
  14. Regulated processing and secretion of a peptide precursor in cilia.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Expression of GEX1 Orthologs ofPlants (Basel, Switzerland) · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Jue NingDepartment of Cell Biology, University of Texas Southwestern Medical School, Dallas, Texas 75390, USA.
Thomas D Otto
Claudia Pfander
Frank Schwach
Mathieu Brochet
Ellen Bushell
David Goulding
Mandy Sanders
Paul A Lefebvre
Jimin Pei
Nick V Grishin
Gary Vanderlaan
Oliver Billker
William J Snell
Wellcome Sanger Institute · GBThe University of Texas Southwestern Medical Center · USHoward Hughes Medical Institute · USUniversity of Minnesota · US

Funding

Cell Biology Research Improvements and RenovationsC06RR030414 · NCRR · UT SOUTHWESTERN MEDICAL CENTER · PI FITZ, JOHN GREGORY · 2010 to 2010
$15.0M
CELL SURFACE RECOGNITION AND CELL INTERACTIONSR01GM025661 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI SNELL, WILLIAM J · 1985 to 2017
$5.9M
MEMBRANE FUSION IN CHLAMYDOMONASR01GM056778 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI SNELL, WILLIAM J · 1998 to 2017
$4.2M
Medical Research Council G0501670NCRR NIH HHS C06 RR030414NCRR NIH HHS C06 RR 30414NIGMS NIH HHS GM25661NIGMS NIH HHS GM56778NIGMS NIH HHS R01 GM025661NIGMS NIH HHS R01 GM056778Wellcome TrustWellcome Trust 098051
6 · The paper itself

Abstract

Fertilization is a crucial yet poorly characterized event in eukaryotes. Our previous discovery that the broadly conserved protein HAP2 (GCS1) functioned in gamete membrane fusion in the unicellular green alga Chlamydomonas and the malaria pathogen Plasmodium led us to exploit the rare biological phenomenon of isogamy in Chlamydomonas in a comparative transcriptomics strategy to uncover additional conserved sexual reproduction genes. All previously identified Chlamydomonas fertilization-essential genes fell into related clusters based on their expression patterns. Out of several conserved genes in a minus gamete cluster, we focused on Cre06.g280600, an ortholog of the fertilization-related Arabidopsis GEX1. Gene disruption, cell biological, and immunolocalization studies show that CrGEX1 functions in nuclear fusion in Chlamydomonas. Moreover, CrGEX1 and its Plasmodium ortholog, PBANKA_113980, are essential for production of viable meiotic progeny in both organisms and thus for mosquito transmission of malaria. Remarkably, we discovered that the genes are members of a large, previously unrecognized family whose first-characterized member, KAR5, is essential for nuclear fusion during yeast sexual reproduction. Our comparative transcriptomics approach provides a new resource for studying sexual development and demonstrates that exploiting the data can lead to the discovery of novel biology that is conserved across distant taxa.

Indexed as

Genes, EssentialAnimalsArabidopsis ProteinsChlamydomonasFertilizationFungiGene Expression ProfilingMeiosisMembrane ProteinsNuclear EnvelopeNuclear ProteinsPlantsPlasmodiumReproductionSaccharomyces cerevisiae ProteinsTranscriptomeArabidopsis ProteinsGEX1 protein, ArabidopsisKAR5 protein, S cerevisiaeMembrane ProteinsNuclear ProteinsSaccharomyces cerevisiae ProteinsChlamydomonasfertilizationKAR5/GEX1/Brambleberrynuclear envelope fusionPlasmodiumRNA sequencing

Identifiers

PMID23699412
PMCPMC3672651
OpenAlexW2135943942

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.