Evidence map›Paper›PMID 23698630›Full record

ArticleJournal of experimental botany2013

Differential accumulation of phenolic compounds and expression of related genes in black- and yellow-seeded Brassica napus.

Cunmin Qu, Fuyou Fu, Kun Lu, Kai Zhang, Rui Wang, Xinfu Xu, Min Wang, Junxing Lu, Huafang Wan, Tang Zhanglin and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 145 citations in OpenAlex.

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  16. Fine mapping and cloning of a novel BrSCC1 gene for seed coat color in Brassica rapa L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  17. Article
  18. The Flavonoid Biosynthesis and Regulation inInternational journal of molecular sciences · 2022
    Review
  19. Article
  20. Multi-omics analysis reveals the mechanism of seed coat color formation in Brassica rapa L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Cunmin QuChongqing Engineering Research Center for Rapeseed, College of Agronomy and Biotechnology, Southwest University, 216 Tiansheng Road, Beibei, Chongqing 400716, People's Republic of China.
Fuyou Fu
Kun Lu
Kai Zhang
Rui Wang
Xinfu Xu
Min Wang
Junxing Lu
Huafang Wan
Tang Zhanglin
Jiana Li
Southwest University · CNAgriculture and Agri-Food Canada · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Developing yellow-seeded Brassica napus (rapeseed) with improved qualities is a major breeding goal. The intermediate and final metabolites of the phenylpropanoid and flavonoid pathways affect not only oil quality but also seed coat colour of B. napus. Here, the accumulation of phenolic compounds was analysed in the seed coats of black-seeded (ZY821) and yellow-seeded (GH06) B. napus. Using toluidine blue O staining and liquid chromatography-mass spectrometry, histochemical and biochemical differences were identified in the accumulation of phenolic compounds between ZY821 and GH06. Two and 13 unique flavonol derivatives were detected in ZY821 and GH06, respectively. Quantitative real-time PCR analysis revealed significant differences between ZY821 and GH06 in the expression of common phenylpropanoid biosynthetic genes (BnPAL and BnC4H), common flavonoid biosynthetic genes (BnTT4 and BnTT6), anthocyanin- and proanthocyandin-specific genes (BnTT3 and BnTT18), proanthocyandin-specific genes (BnTT12, BnTT10, and BnUGT2) and three transcription factor genes (BnTTG1, BnTTG2, and BnTT8) that function in the flavonoid biosynthetic pathway. These data provide insight into pigment accumulation in B. napus, and serve as a useful resource for researchers analysing the formation of seed coat colour and the underlying regulatory mechanisms in B. napus.

Indexed as

Brassica napusFlavonoidsGene Expression Regulation, PlantPhenolsPlant ProteinsSeedsFlavonoidsPhenolsPlant ProteinsBrassica napusexpression profileflavonoid pathwayphenolic compoundsregulatory mechanismseed coat colour.

Identifiers

PMID23698630
PMCPMC3697950
OpenAlexW2127683006

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.