Evidence map›Paper›PMID 23698307›Full record

ArticleJournal of virology2013

The structure of the NTPase that powers DNA packaging into Sulfolobus turreted icosahedral virus 2.

Lotta J Happonen, Esko Oksanen, Lassi Liljeroos, Adrian Goldman, Tommi Kajander, Sarah J Butcher

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Viruses of theFrontiers in microbiology · 2023
    Review
  4. The enigmatic archaeal virosphere.Nature reviews. Microbiology · 2017
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Lotta J HapponenInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.
Esko Oksanen
Lassi Liljeroos
Adrian Goldman
Tommi Kajander
Sarah J Butcher
University of Helsinki · FIEuropean Spallation Source · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biochemical reactions powered by ATP hydrolysis are fundamental for the movement of molecules and cellular structures. One such reaction is the encapsidation of the double-stranded DNA (dsDNA) genome of an icosahedrally symmetric virus into a preformed procapsid with the help of a genome-translocating NTPase. Such NTPases have been characterized in detail from both RNA and tailed DNA viruses. We present four crystal structures and the biochemical activity of a thermophilic NTPase, B204, from the nontailed, membrane-containing, hyperthermoacidophilic archaeal dsDNA virus Sulfolobus turreted icosahedral virus 2. These are the first structures of a genome-packaging NTPase from a nontailed, dsDNA virus with an archaeal host. The four structures highlight the catalytic cycle of B204, pinpointing the molecular movement between substrate-bound (open) and empty (closed) active sites. The protein is shown to bind both single-stranded and double-stranded nucleic acids and to have an optimum activity at 80°C and pH 4.5. The overall fold of B204 places it in the FtsK-HerA superfamily of P-loop ATPases, whose cellular and viral members have been suggested to share a DNA-translocating mechanism.

Indexed as

DNA PackagingAdenosine TriphosphateArchaeal VirusesCatalytic DomainCrystallography, X-RayDNA, ViralEnzyme StabilityHydrogen-Ion ConcentrationHydrolysisModels, MolecularNucleoside-TriphosphataseProtein ConformationSulfolobusTemperatureAdenosine TriphosphateDNA, ViralNucleoside-Triphosphatase

Identifiers

PMID23698307
PMCPMC3719838
OpenAlexW2167035400

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.