Evidence map›Paper›PMID 23696810›Full record

ArticlePloS one2013

In silico analysis of the fucosylation-associated genome of the human blood fluke Schistosoma mansoni: cloning and characterization of the fucosyltransferase multigene family.

Nathan A Peterson, Tavis K Anderson, Timothy P Yoshino

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
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  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Nathan A PetersonDepartment of Entomology, University of Wisconsin, Madison, Wisconsin, United States of America.
Tavis K Anderson
Timothy P Yoshino
University of Wisconsin–Madison · USAgricultural Research Service · US

Funding

Parasitology and Vector Biology Training ProgramT32AI007414 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI Lyric Colleen Bartholomay · 1992 to 2026
$4.5M
IMMUNOBIOLOGY OF SCHISTOSOME-MOLLUSK INTERACTIONSR01AI015503 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI YOSHINO, TIMOTHY P. · 1988 to 2014
$3.4M
Functional genomics of molluscan schistosome developmentR01AI061436 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI YOSHINO, TIMOTHY P. · 2005 to 2009
$1.7M
Immunobiology of schistosome-mollusc interactionsR56AI015503 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI YOSHINO, TIMOTHY P. · 2009 to 2009
$293k
IMMUNOBIOLOGY OF SCHISTOSOME-MOLLUSC INTERACTIONSR22AI015503 · NIAID · UNIVERSITY OF OKLAHOMA NORMAN · PI YOSHINO, TIMOTHY P. · 1985 to 1987
–
NIAID NIH HHS AI015503NIAID NIH HHS AI061436NIAID NIH HHS HHSN272201000005CNIAID NIH HHS HHSN272201000005INIAID NIH HHS R01 AI015503NIAID NIH HHS R01 AI061436NIAID NIH HHS R56 AI015503NIAID NIH HHS T32 AI007414
6 · The paper itself

Abstract

Fucosylated glycans of the parasitic flatworm Schistosoma mansoni play key roles in its development and immunobiology. In the present study we used a genome-wide homology-based bioinformatics approach to search for genes that contribute to fucosylated glycan expression in S. mansoni, specifically the α2-, α3-, and α6-fucosyltransferases (FucTs), which transfer L-fucose from a GDP-L-fucose donor to an oligosaccharide acceptor. We identified and in silico characterized several novel schistosome FucT homologs, including six α3-FucTs and six α6-FucTs, as well as two protein O-FucTs that catalyze the unrelated transfer of L-fucose to serine and threonine residues of epidermal growth factor- and thrombospondin-type repeats. No α2-FucTs were observed. Primary sequence analyses identified key conserved FucT motifs as well as characteristic transmembrane domains, consistent with their putative roles as fucosyltransferases. Most genes exhibit alternative splicing, with multiple transcript variants generated. A phylogenetic analysis demonstrated that schistosome α3- and α6-FucTs form monophyletic clades within their respective gene families, suggesting multiple gene duplications following the separation of the schistosome lineage from the main evolutionary tree. Quantitative decreases in steady-state transcript levels of some FucTs during early larval development suggest a possible mechanism for differential expression of fucosylated glycans in schistosomes. This study systematically identifies the complete repertoire of FucT homologs in S. mansoni and provides fundamental information regarding their genomic organization, genetic variation, developmental expression, and evolutionary history.

Indexed as

AnimalsCloning, OrganismFucosyltransferasesGenome, HelminthHelminth ProteinsMultigene FamilySchistosoma mansoniFucosyltransferasesHelminth Proteins

Identifiers

PMID23696810
PMCPMC3655985
OpenAlexW1988230280

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.