Evidence map›Paper›PMID 23695577›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2013

Expression, purification and crystallization of the C-terminal LRR domain of Streptococcus pyogenes protein 0843.

Teemu Haikarainen, Vuokko Loimaranta, Carlos Prieto-Lopez, Pradeep Battula, Jukka Finne, Anastassios C Papageorgiou

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Teemu HaikarainenTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, 20521 Turku, Finland.
Vuokko Loimaranta
Carlos Prieto-Lopez
Pradeep Battula
Jukka Finne
Anastassios C Papageorgiou
Åbo Akademi University · FITurku Centre for Biotechnology · FIUniversity of Helsinki · FIUniversity of Turku · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Streptococcus pyogenes protein 0843 (Spy0843) is a recently identified protein with a potential adhesin function. Sequence analysis has shown that Spy0843 contains two leucine-rich repeat (LRR) domains that mediate interactions with the gp340 receptor. Here, the C-terminal LRR domain was overexpressed in Escherichia coli, purified and crystallized in the presence of 1.7-1.8 M ammonium sulfate pH 7.4 as precipitant. Data were collected from a single crystal to 1.59 Å resolution at 100 K at a synchrotron-radiation source. The crystal was found to belong to space group I41, with unit-cell parameters a = b = 121.4, c = 51.5 Å and one molecule in the asymmetric unit. Elucidation of the crystal structure will provide insights into the interactions of Spy0843 with the gp340 receptor and a better understanding of the role of Spy0843 in streptococcal infections.

Indexed as

Gene Expression Regulation, BacterialStreptococcus pyogenesBacterial ProteinsCrystallizationLeucineProtein Structure, TertiaryStreptococcal InfectionsBacterial ProteinsLeucinebacterial adhesionleucine-rich repeatsscavenger receptorsSpy0843Streptococcus pyogenes

Identifiers

PMID23695577
PMCPMC3660901
OpenAlexW2065563544

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.