Evidence map›Paper›PMID 23695558›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2013

Structure of the Yersinia pestis tip protein LcrV refined to 1.65 Å resolution.

Sukanya Chaudhury, Kevin P Battaile, Scott Lovell, Gregory V Plano, Roberto N De Guzman

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. The type III secretion system needle, tip, and translocon.Protein science : a publication of the Protein Society · 2019
    Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. The Amino-Terminal Part of the Needle-Tip Translocator LcrV ofFrontiers in cellular and infection microbiology · 2016
    Article
  13. Article
  14. Structure of CT584 from Chlamydia trachomatis refined to 3.05 Å resolution.Acta crystallographica. Section F, Structural biology and crystallization communications · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sukanya ChaudhuryDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045, USA.
Kevin P Battaile
Scott Lovell
Gregory V Plano
Roberto N De Guzman

Funding

TRAFFICKING OF THE PLASMA MEMBRANE CA2+-ATPASE TO RAFTSP20RR017708 · NCRR · UNIVERSITY OF KANSAS LAWRENCE · PI HOLYOAK, TODD · 2002 to 2011
$20.1M
NMR studies of bacterial needle and tip proteinsR01AI074856 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI DE GUZMAN, ROBERTO N · 2008 to 2018
$3.6M
Control of virulence protein export in Yersinia pestisR01AI039575 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PLANO, GREGORY V · 2001 to 2011
$3.3M
Protein Structure and FunctionP20GM103420 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2012 to 2012
$2.0M
CONTROL OF VIRULENCE PROTEIN EXPORT IN YERSINIA PESTISR29AI039575 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PLANO, GREGORY V · 1996 to 2000
$112k
NCRR NIH HHS 5P20RR017708-10NCRR NIH HHS P20 RR017708NIAID NIH HHS AI039575NIAID NIH HHS AI074856NIAID NIH HHS R01 AI039575NIAID NIH HHS R01 AI074856NIAID NIH HHS R29 AI039575NIGMS NIH HHS 8P20GM103420-10NIGMS NIH HHS P20 GM103420
6 · The paper itself

Abstract

The human pathogen Yersinia pestis requires the assembly of the type III secretion system (T3SS) for virulence. The structural component of the T3SS contains an external needle and a tip complex, which is formed by LcrV in Y. pestis. The structure of an LcrV triple mutant (K40A/D41A/K42A) in a C273S background has previously been reported to 2.2 Å resolution. Here, the crystal structure of LcrV without the triple mutation in a C273S background is reported at a higher resolution of 1.65 Å. Overall the two structures are similar, but there are also notable differences, particularly near the site of the triple mutation. The refined structure revealed a slight shift in the backbone positions of residues Gly28-Asn43 and displayed electron density in the loop region consisting of residues Ile46-Val63, which was disordered in the original structure. In addition, the helical turn region spanning residues Tyr77-Gln95 adopts a different orientation.

Indexed as

Yersinia pestisAntigens, BacterialCrystallography, X-RayMutationPore Forming Cytotoxic ProteinsProtein Structure, SecondaryAntigens, BacterialLcrV protein, YersiniaPore Forming Cytotoxic ProteinsLcrVtip proteinstype III secretion systemYersinia pestis

Identifiers

PMID23695558
PMCPMC3660882

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.