Evidence map›Paper›PMID 23695252›Full record

ArticleActa crystallographica. Section D, Biological crystallography2013

Structure of Streptococcus agalactiae tip pilin GBS104: a model for GBS pili assembly and host interactions.

Vengadesan Krishnan, Prabhat Dwivedi, Brandon J Kim, Alexandra Samal, Kevin Macon, Xin Ma, Arunima Mishra, Kelly S Doran, Hung Ton-That, Sthanam V L Narayana

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. LrpCBA pilus proteins of gut-dwelling Ligilactobacillus ruminis: crystallization and X-ray diffraction analysis.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Progress toward a group B streptococcal vaccine.Human vaccines & immunotherapeutics · 2018
    Article
  14. Pilus biogenesis of Gram-positive bacteria: Roles of sortases and implications for assembly.Protein science : a publication of the Protein Society · 2017
    Review
  15. Novel Molecular Insights about Lactobacillar Sortase-Dependent Piliation.International journal of molecular sciences · 2017
    Review
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Vengadesan KrishnanUNESCO Regional Centre for Biotechnology (RCB), Gurgaon 122 016, Haryana, India.
Prabhat Dwivedi
Brandon J Kim
Alexandra Samal
Kevin Macon
Xin Ma
Arunima Mishra
Kelly S Doran
Hung Ton-That
Sthanam V L Narayana
The University of Texas Health Science Center at Houston · USUniversity of Alabama at Birmingham · USSan Diego State University · USRegional Centre for Biotechnology · IN

Funding

Blood-brain barrier in bacterial meningitisR01NS051247 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DORAN, KELLY S · 2006 to 2015
$3.2M
Pilus Assembly in Gram-Positive BacteriaR01AI061381 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI TON-THAT, HUNG · 2006 to 2010
$1.6M
Pilus assembly in Gram-positive bacteriaR56AI061381 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI TON-THAT, HUNG · 2012 to 2012
$380k
THE C3D COMPLEMENT RECEPTOR OF CANDIDA ALBICANSP01AI037251 · NIAID · GEORGETOWN UNIVERSITY · PI CALDERONE, RICHARD ARTHUR · 1995 to 1998
–
NIAID NIH HHS AI037251NIAID NIH HHS AI061381NIAID NIH HHS R01 AI061381NIAID NIH HHS R56 AI061381NINDS NIH HHS R01 NS051247NINDS NIH HHS R01NS051247
6 · The paper itself

Abstract

The crystal structure of a 75 kDa central fragment of GBS104, a tip pilin from the 2063V/R strain of Streptococcus agalactiae (group B streptococcus; GBS), is reported. In addition, a homology model of the remaining two domains of GBS104 was built and a model of full-length GBS104 was generated by combining the homology model (the N1 and N4 domains) and the crystal structure of the 75 kDa fragment (the N2 and N3 domains). This rod-shaped GBS104 model is constructed of three IgG-like domains (the N1, N2 and N4 domains) and one vWFA-like domain (the N3 domain). The N1 and N2 domains of GBS104 are assembled with distinct and remote segments contributed by the N- and C-termini. The metal-binding site in the N3 domain of GBS104 is in the closed/low-affinity conformation. Interestingly, this domain hosts two long arms that project away from the metal-binding site. Using site-directed mutagenesis, two cysteine residues that lock the N3 domain of GBS104 into the open/high-affinity conformation were introduced. Both wild-type and disulfide-locked recombinant proteins were tested for binding to extracellular matrix proteins such as collagen, fibronectin, fibrinogen and laminin, and an increase in fibronectin binding affinity was identified for the disulfide-locked N3 domain, suggesting that induced conformational changes may play a possible role in receptor binding.

Indexed as

Binding SitesExtracellular Matrix ProteinsFimbriae ProteinsModels, MolecularMutagenesis, Site-DirectedProtein BindingProtein ConformationStreptococcus agalactiaeX-Ray DiffractionExtracellular Matrix ProteinsFimbriae ProteinsGBS104group B streptococcuspili assemblytip pilins

Identifiers

PMID23695252
PMCPMC3663123
OpenAlexW2063563910

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.