Evidence map›Paper›PMID 23692271›Full record

ArticleThe New phytologist2013

Void space inside the developing seed of Brassica napus and the modelling of its function.

Pieter Verboven, Els Herremans, Ljudmilla Borisjuk, Lukas Helfen, Quang Tri Ho, Henning Tschiersch, Johannes Fuchs, Bart M Nicolaï, Hardy Rolletschek

Open access · greenAbstract read
In one paragraph

Article in The New phytologist, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
11.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 52 citations in OpenAlex.

  1. Advances in seed hypoxia research.Plant physiology · 2024
    Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Pieter VerbovenBIOSYST- MeBioS, Faculty of Bioscience Engineering, University of Leuven, W. de Croylaan 42, 3001, Leuven, Belgium.
Els HerremansBIOSYST- MeBioS, Faculty of Bioscience Engineering, University of Leuven, W. de Croylaan 42, 3001, Leuven, Belgium.
Ljudmilla BorisjukLeibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Gatersleben, Germany.
Lukas HelfenIPS/ANKA, Karlsruhe Institute of Technology, PO Box 3640, 76021, Karlsruhe, Germany.
Quang Tri HoBIOSYST- MeBioS, Faculty of Bioscience Engineering, University of Leuven, W. de Croylaan 42, 3001, Leuven, Belgium.
Henning TschierschLeibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Gatersleben, Germany.
Johannes FuchsLeibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Gatersleben, Germany.
Bart M NicolaïBIOSYST- MeBioS, Faculty of Bioscience Engineering, University of Leuven, W. de Croylaan 42, 3001, Leuven, Belgium.
Hardy RolletschekLeibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Gatersleben, Germany.
KU Leuven · BELeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) · DEKarlsruhe Institute of Technology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The developing seed essentially relies on external oxygen to fuel aerobic respiration, but it is currently unknown how oxygen diffuses into and within the seed, which structural pathways are used and what finally limits gas exchange. By applying synchrotron X-ray computed tomography to developing oilseed rape seeds we uncovered void spaces, and analysed their three-dimensional assembly. Both the testa and the hypocotyl are well endowed with void space, but in the cotyledons, spaces were small and poorly inter-connected. In silico modelling revealed a three orders of magnitude range in oxygen diffusivity from tissue to tissue, and identified major barriers to gas exchange. The oxygen pool stored in the voids is consumed about once per minute. The function of the void space was related to the tissue-specific distribution of storage oils, storage protein and starch, as well as oxygen, water, sugars, amino acids and the level of respiratory activity, analysed using a combination of magnetic resonance imaging, specific oxygen sensors, laser micro-dissection, biochemical and histological methods. We conclude that the size and inter-connectivity of void spaces are major determinants of gas exchange potential, and locally affect the respiratory activity of a developing seed.

Indexed as

Models, BiologicalBrassica napusCell CompartmentationCell RespirationComputer SimulationDiffusionGasesHypocotylOxygenPlant OilsPorosityReproducibility of ResultsSeedsX-Ray MicrotomographyGasesOxygenPlant OilsBrassica napusgas exchangemitochondrial respirationoxygen diffusivitysynchrotron X-ray computed tomography

Identifiers

PMID23692271
PMCPMC3784975
OpenAlexW1968010267

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.