Evidence map›Paper›PMID 23691517›Full record

ArticleJournal of diabetes research2013

The Missing Heritability in T1D and Potential New Targets for Prevention.

Brian G Pierce, Ryan Eberwine, Janelle A Noble, Michael Habib, Hennady P Shulha, Zhiping Weng, Elizabeth P Blankenhorn, John P Mordes

Open access · goldAbstract read
In one paragraph

Article in Journal of diabetes research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Pulmonary toxicity of immune checkpoint immunotherapy.The Journal of clinical investigation · 2024
    Review
  4. Article
  5. The missing heritability in type 1 diabetes.Diabetes, obesity & metabolism · 2022
    Review
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Brian G PierceProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Ryan Eberwine
Janelle A Noble
Michael Habib
Hennady P Shulha
Zhiping Weng
Elizabeth P Blankenhorn
John P Mordes
University of Massachusetts Chan Medical School · USDrexel University · US

Funding

The genetic basis of type 1 diabetes autoimmunity in African AmericansR01DK061722 · NIDDK · CHILDREN'S HOSPITAL &RES CTR AT OAKLAND · PI NOBLE, JANELLE A · 2003 to 2013
$3.5M
Evaluation of the role of MDA5 in virus-mediated type I diabetesR01AI092105 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WANG, JENNIFER P · 2011 to 2015
$2.0M
Continual Development of Protein Docking AlgorithmsR01GM084884 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WENG, ZHIPING · 2009 to 2012
$1.2M
Autoimmunity-associated genes in new rat models: validation of human GWAS genesR21AI088480 · NIAID · DREXEL UNIVERSITY · PI BLANKENHORN, ELIZABETH P · 2010 to 2011
$444k
The genetic basis of type 1 diabetes autoimmunity in African AmericansR56DK061722 · NIDDK · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI NOBLE, JANELLE A · 2008 to 2008
$311k
NIAID NIH HHS R01 AI092105NIAID NIH HHS R21 AI088480NIDDK NIH HHS R01 DK061722NIDDK NIH HHS R56 DK061722NIGMS NIH HHS R01 GM084884
6 · The paper itself

Abstract

Type 1 diabetes (T1D) is a T cell-mediated disease. It is strongly associated with susceptibility haplotypes within the major histocompatibility complex, but this association accounts for an estimated 50% of susceptibility. Other studies have identified as many as 50 additional susceptibility loci, but the effect of most is very modest (odds ratio (OR) <1.5). What accounts for the "missing heritability" is unknown and is often attributed to environmental factors. Here we review new data on the cognate ligand of MHC molecules, the T cell receptor (TCR). In rats, we found that one allele of a TCR variable gene, V β 13A, is strongly associated with T1D (OR >5) and that deletion of V β 13+ T cells prevents diabetes. A role for the TCR is also suspected in NOD mice, but TCR regions have not been associated with human T1D. To investigate this disparity, we tested the hypothesis in silico that previous studies of human T1D genetics were underpowered to detect MHC-contingent TCR susceptibility. We show that stratifying by MHC markedly increases statistical power to detect potential TCR susceptibility alleles. We suggest that the TCR regions are viable candidates for T1D susceptibility genes, could account for "missing heritability," and could be targets for prevention.

Identifiers

PMID23691517
PMCPMC3647582
OpenAlexW2146767170

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.