Evidence map›Paper›PMID 23691088›Full record

ArticlePloS one2013

Alternative CHRNB4 3'-UTRs mediate the allelic effects of SNP rs1948 on gene expression.

Xavier Gallego, Ryan J Cox, James R Laughlin, Jerry A Stitzel, Marissa A Ehringer

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Role of β4* Nicotinic Acetylcholine Receptors in the Habenulo-Interpeduncular Pathway in Nicotine Reinforcement in Mice.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2016
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xavier GallegoInstitute for Behavioral Genetics, University of Colorado Boulder, Boulder, Colorado, USA.
Ryan J Cox
James R Laughlin
Jerry A Stitzel
Marissa A Ehringer
University of Colorado Boulder · US

Funding

STATISTICAL GENETICS AND TREATMENT ANALYSISP50MH086383 · NIMH · UNIVERSITY OF COLORADO DENVER · PI FREEDMAN, ROBERT R · 2009 to 2013
$10.6M
Translational studies of nicotinic receptor genes: alcohol and nicotine behaviorsR01AA017889 · NIAAA · UNIVERSITY OF COLORADO · PI EHRINGER, MARISSA A · 2009 to 2013
$2.6M
Nicotinic receptor genes & substance abuse: Functional studies of associated SNPsR21DA026901 · NIDA · UNIVERSITY OF COLORADO · PI EHRINGER, MARISSA A, STITZEL, JERRY A · 2009 to 2010
$872k
NIAAA NIH HHS R01 AA017889NIDA NIH HHS R21 DA026901NIMH NIH HHS 5P50MH086383-03NIMH NIH HHS P50 MH086383
6 · The paper itself

Abstract

Common genetic factors strongly contribute to both nicotine, the main addictive component of tobacco, and alcohol use. Several lines of evidence suggest nicotinic acetylcholine receptors as common sites of action for nicotine and alcohol. Specifically, rs1948, a single-nucleotide polymorphism (SNP) located in the CHRNB4 3'-untranslated region (UTR), has been associated to early age of initiation for both alcohol and tobacco use. To determine the allelic effects of rs1948 on gene expression, two rs1948-containing sequences of different lengths corresponding to the CHRNB4 3'-UTR were cloned into pGL3-promoter luciferase reporter vectors. Data obtained showed that the allelic effects of SNP rs1948 on luciferase expression are mediated by the length and species of transcripts generated. In addition, it was found that miR-3157 increased the overall luciferase expression while miR-138, a microRNA known to play a role in neuroadaptation to drug abuse, decreased luciferase expression when compared to basal conditions. These findings demonstrate the importance of SNP rs1948 on the regulation of CHRNB4 expression and provide the first evidence of CHRNB4 down-regulation by miR-138.

Indexed as

AllelesPolymorphism, Single Nucleotide3' Untranslated RegionsBase SequenceCell Line, TumorGene Expression RegulationHumansLuciferasesMicroRNAsNerve Tissue ProteinsReceptors, Nicotinic3' Untranslated RegionsCHRNB4 protein, humanLuciferasesMicroRNAsMIRN138 microRNA, humanNerve Tissue ProteinsReceptors, Nicotinic

Identifiers

PMID23691088
PMCPMC3653846
OpenAlexW1977414923

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.